RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CCDC122Q5T0U0 273 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 CTR9Q6PD62 1173 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC148Q8NFR7 591 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 TTYH3Q9C0H2 523 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 TMEM60Q9H2L4 133 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 HAUS4Q9H6D7 363 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 GNL3LQ9NVN8 582 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 CAPN11Q9UMQ6 739 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 LUC7L2Q9Y383 392 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 SAR1BQ9Y6B6 198 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 A0A1B0GUL6 1792 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 B4DLN1 442 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 EIF3CLB5ME19 914 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 ERVV-1B6SEH8 477 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L12C9JPN9 530 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L21D6R901 530 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 PES1O00541 588 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 CYP2D6P10635 497 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 GGCXP38435 758 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 TNNT3P45378 269 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 EVA1CP58658 441 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 NLRP5P59047 1200 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 CYP27A1Q02318 531 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 SKIDA1Q1XH10 827 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 PDS5AQ29RF7 1337 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 HSP90B2PQ58FF3 399 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 DMRTA1Q5VZB9 504 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 PACS2Q86VP3 889 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 SMCR8Q8TEV9 937 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 COG1Q8WTW3 980 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 HDAC7Q8WUI4 952 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 GPKOWQ92917 476 aaPredicted RBP eCLIP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 JAKMIP2Q96AA8 810 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 EIF3CQ99613 913 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 DUSP9Q99956 384 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 EHD4Q9H223 541 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 ACBD3Q9H3P7 528 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 MED4Q9NPJ6 270 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 RBM28Q9NW13 759 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 BCL9O00512 1426 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 ZNF804BA4D1E1 1349 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 H7C1D1 291 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 PLEKP08567 350 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SCG2P13521 617 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 PSEN2P49810 448 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 C2orf54Q08AI8 447 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 MEA1Q16626 185 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SLC35G1Q2M3R5 365 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 TTI2Q6NXR4 508 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 KRT26Q7Z3Y9 468 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 GPIHBP1Q8IV16 184 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 ANKRD20A12PQ8NF67 263 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 PYM1Q9BRP8 204 aaKnown RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 VIPAS39Q9H9C1 493 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 BRMS1Q9HCU9 246 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 DISC1Q9NRI5 854 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 XIRP1Q702N8 1843 aaKnown RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 A0A1W2PQC6 194 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 MACROD2A1Z1Q3 448 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 HRO43593 1189 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 DDAH1O94760 285 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SRGNP10124 158 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 MCM3P25205 808 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 IL6STP40189 918 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 STAT6P42226 847 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 PFKFB3Q16875 520 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SLC4A8Q2Y0W8 1093 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 RCSD1Q6JBY9 416 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 CCNI2Q6ZMN8 369 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 IQCA1Q86XH1 822 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 STAG2Q8N3U4 1231 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 AFAP1L1Q8TED9 768 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SELENOOQ9BVL4 669 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 NHEJ1Q9H9Q4 299 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 SMARCAL1Q9NZC9 954 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 MKRN1Q9UHC7 482 aaKnown RBP6.07□□□□□ -1.44
LIMA1-212ENST00000552491 ABCA3Q99758 1704 aa6.07□□□□□ -1.44
LIMA1-212ENST00000552491 M0R2N6 131 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 KLRK1P26718 216 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 LONP1P36776 959 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 TRAPPC10P48553 1259 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 EIF5P55010 431 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 CORO7P57737 925 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 STIM1Q13586 685 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 MIIPQ5JXC2 388 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 INTS5Q6P9B9 1019 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 KIAA1328Q86T90 577 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 GIMAP8Q8ND71 665 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 FBXO22Q8NEZ5 403 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 HPS3Q969F9 1004 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 RRP36Q96EU6 259 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 TRIM47Q96LD4 638 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 PURBQ96QR8 312 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 TUBGCP2Q9BSJ2 902 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 BRIP1Q9BX63 1249 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 RMND1Q9NWS8 449 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 EHD2Q9NZN4 543 aa6.06□□□□□ -1.44
LIMA1-212ENST00000552491 DMGDHQ9UI17 866 aaKnown RBP6.06□□□□□ -1.44
LIMA1-212ENST00000552491 COL22A1Q8NFW1 1626 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms