RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 XRCC6P12956 609 aaKnown RBP eCLIP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 CALML3P27482 149 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 TRAPPC10P48553 1259 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 NOVP48745 357 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 STK38Q15208 465 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 SF3A1Q15459 793 aaKnown RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 MAP3K11Q16584 847 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC93Q567U6 631 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 KRT40Q6A162 431 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC73Q6ZRK6 1079 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 RBM43Q6ZSC3 357 aaKnown RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 USP17L1Q7RTZ2 530 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 NBPF11Q86T75 865 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 ZNF713Q8N859 430 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 WHAMMQ8TF30 809 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC17Q96LX7 622 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 SLC26A6Q9BXS9 759 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 TSPY26PQ9H489 355 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 GDPD2Q9HCC8 539 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 TTF2Q9UNY4 1162 aaKnown RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 TACC3Q9Y6A5 838 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 SCN9AQ15858 1988 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 ZC3H4Q9UPT8 1303 aaKnown RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 GREB1LQ9C091 1923 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 MYH4Q9Y623 1939 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 SPTLC2O15270 562 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 ECE2O60344 883 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 USP17L8P0C7I0 530 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 CDK8P49336 464 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 TFAP4Q01664 338 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 RASSF7Q02833 373 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 FAM160A1Q05DH4 1040 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC173Q0VFZ6 552 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 SLC39A14Q15043 492 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 FOXD4L6Q3SYB3 417 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 ANO1Q5XXA6 986 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 ZNF385CQ66K41 422 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 PPP2R2DQ66LE6 453 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 MSL1Q68DK7 614 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 FOXD4L3Q6VB84 417 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 TMTC3Q6ZXV5 915 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 SV2AQ7L0J3 742 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 NOSTRINQ8IVI9 506 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 MAPKAPK5Q8IW41 473 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 TEX2Q8IWB9 1127 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 ELOA2Q8IYF1 753 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 TMEM151AQ8N4L1 468 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 ZNF784Q8NCA9 323 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 LINC00301Q8NCQ3 95 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC148Q8NFR7 591 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 BICD2Q8TD16 824 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC12Q8WUD4 166 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 NUP133Q8WUM0 1156 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC34Q96HJ3 373 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 USP28Q96RU2 1077 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 IDI2Q9BXS1 227 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 NUP62CLQ9H1M0 184 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 HMX1Q9NP08 348 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-239ENST00000545694 INCENPQ9NQS7 918 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 SYNPO2Q9UMS6 1093 aa7.12□□□□□ -1.27
SYNE1-239ENST00000545694 BRCA1P38398 1863 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 CYP2D7A0A087X1C5 515 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 FAM237AA0A1B0GTK4 181 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 SYCE3A1L190 88 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 KINO60870 393 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 ENTPD3O75355 529 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 GDF11O95390 407 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 TOP1P11387 765 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 RASA1P20936 1047 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 CMA1P23946 247 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 POLD1P28340 1107 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 CRKP46108 304 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 ME1P48163 572 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 GABPAQ06546 454 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 GRM4Q14833 912 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 HS1BP3Q53T59 392 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 DACT2Q5SW24 774 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 FKBP1CQ5VVH2 108 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 RCSD1Q6JBY9 416 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 FOXP4Q8IVH2 680 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 SVOPQ8N4V2 548 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 PNMA1Q8ND90 353 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 RNF217Q8TC41 542 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 MRPS27Q92552 414 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 PHKBQ93100 1093 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 TIGD1Q96MW7 591 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 GPR101Q96P66 508 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 PYM1Q9BRP8 204 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 ZKSCAN3Q9BRR0 538 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 TNMDQ9H2S6 317 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 CLSTN2Q9H4D0 955 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 TFIP11Q9UBB9 837 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 SERPINB13Q9UIV8 391 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 HDAC9Q9UKV0 1011 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 NOL7Q9UMY1 257 aaKnown RBP7.11□□□□□ -1.27
SYNE1-239ENST00000545694 JAG2Q9Y219 1238 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 GPSM3Q9Y4H4 160 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 FER1L6Q2WGJ9 1857 aa7.11□□□□□ -1.27
SYNE1-239ENST00000545694 CNTNAP5Q8WYK1 1306 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms