RNA–Protein interactions for RNA: ENST00000542777.1

DDX11-222, Transcript of DEAD/H-box helicase 11, human

TSL 2

Gene DDX11, Length 489 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-222	ENST00000542777	RRP12	Q5JTH9	1297 aa	Known RBP	18.96	■□□□□ 0.63
DDX11-222	ENST00000542777	TTYH1	Q9H313	450 aa	Predicted RBP	18.96	■□□□□ 0.63
DDX11-222	ENST00000542777	CYP39A1	Q9NYL5	469 aa		18.96	■□□□□ 0.63
DDX11-222	ENST00000542777	CCPG1	Q9ULG6	757 aa		18.96	■□□□□ 0.63
DDX11-222	ENST00000542777		A0A0D9SFI3	127 aa		18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	TTBK2	Q6IQ55	1244 aa		18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	MFSD5	Q6N075	450 aa		18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	NSMF	Q6X4W1	530 aa		18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	DDX49	Q9Y6V7	483 aa	Known RBP	18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	ASTN1	O14525	1302 aa		18.95	■□□□□ 0.62
DDX11-222	ENST00000542777	LAMA2	P24043	3122 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	TLR3	O15455	904 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	ICAM1	P05362	532 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	HSPD1	P10809	573 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	TOP1	P11387	765 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	SLC16A2	P36021	539 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	BTNL9	Q6UXG8	535 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	TICAM2	Q86XR7	235 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	TMEM47	Q9BQJ4	181 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	AP5M1	Q9H0R1	490 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	RANBP17	Q9H2T7	1088 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	TCP11L1	Q9NUJ3	509 aa		18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	GNE	Q9Y223	722 aa	Known RBP	18.94	■□□□□ 0.62
DDX11-222	ENST00000542777	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	TRIM6-TRIM34	B2RNG4	842 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	DYNC1LI2	O43237	492 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	SMPD1	P17405	629 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	NMI	Q13287	307 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	PPIG	Q13427	754 aa	Known RBP eCLIP	18.93	■□□□□ 0.62	2e-8	■■■■■ 31.8
DDX11-222	ENST00000542777	SYDE2	Q5VT97	1194 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	IQSEC1	Q6DN90	963 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	TAPT1	Q6NXT6	567 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	CXCL17	Q6UXB2	119 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	EEPD1	Q7L9B9	569 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	TLK2	Q86UE8	772 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	ZNF589	Q86UQ0	364 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	FAM126B	Q8IXS8	530 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	MYLIP	Q8WY64	445 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	GPCPD1	Q9NPB8	672 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	PDGFC	Q9NRA1	345 aa		18.93	■□□□□ 0.62
DDX11-222	ENST00000542777	TMEM265	A0A087WTH1	108 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	CABYR	O75952	493 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	FSCN1	Q16658	493 aa	Known RBP	18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	FBXO16	Q8IX29	292 aa	Predicted RBP	18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	TMEM199	Q8N511	208 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	MAFA	Q8NHW3	353 aa	Predicted RBP	18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	RILPL2	Q969X0	211 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	PURB	Q96QR8	312 aa	Known RBP	18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	PPP1R12C	Q9BZL4	782 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	LNPK	Q9C0E8	428 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	ZMYM6	O95789	1325 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	FRMPD2	Q68DX3	1309 aa	Predicted RBP	18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	LCT	P09848	1927 aa		18.92	■□□□□ 0.62
DDX11-222	ENST00000542777	LRRC37A2	A6NM11	1700 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	ZEB2	O60315	1214 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	CD4	P01730	458 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	CSF2RA	P15509	400 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	PTGS1	P23219	599 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	HAND2	P61296	217 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	BAAT	Q14032	418 aa	Predicted RBP	18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	TMEM240	Q5SV17	173 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	KIAA1211	Q6ZU35	1233 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	C16orf59	Q7L2K0	433 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	MORC4	Q8TE76	937 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	VTA1	Q9NP79	307 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777		Q9Y3F1	56 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	CCDC171	Q6TFL3	1326 aa		18.91	■□□□□ 0.62
DDX11-222	ENST00000542777	ITGA7	Q13683	1181 aa		18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	AKNAD1	Q5T1N1	836 aa		18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	TMEM63B	Q5T3F8	832 aa		18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	MFSD6	Q6ZSS7	791 aa		18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	SLC43A3	Q8NBI5	491 aa		18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	ADD3	Q9UEY8	706 aa	Known RBP	18.9	■□□□□ 0.62
DDX11-222	ENST00000542777	PTPDC1	A2A3K4	754 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	NFIB	O00712	420 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	ACR	P10323	421 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	PDHB	P11177	359 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	DNAJB2	P25686	324 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	CYP2C18	P33260	490 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	ALDH5A1	P51649	535 aa	Predicted RBP	18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	B4GALNT3	Q6L9W6	998 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	TTC14	Q96N46	770 aa		18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	COL25A1	Q9BXS0	654 aa	Predicted RBP	18.89	■□□□□ 0.61
DDX11-222	ENST00000542777	PC	P11498	1178 aa	Known RBP	18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	FOSL2	P15408	326 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	SDS	P20132	328 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	MFAP1	P55081	439 aa	Known RBP	18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	AAMP	Q13685	434 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	ZNF365	Q70YC5	407 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	SEZ6L	Q9BYH1	1024 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	RWDD1	Q9H446	243 aa	Predicted RBP	18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	GRIN2D	O15399	1336 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777		A0A0C4DFX4	3053 aa		18.88	■□□□□ 0.61
DDX11-222	ENST00000542777	LOC102724159	A0A0B4J2E5	919 aa		18.87	■□□□□ 0.61
DDX11-222	ENST00000542777	PSMC6	P62333	389 aa		18.87	■□□□□ 0.61
DDX11-222	ENST00000542777	ZNF543	Q08ER8	600 aa		18.87	■□□□□ 0.61
DDX11-222	ENST00000542777	GRIN2C	Q14957	1233 aa		18.87	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms