RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TXKP42681 527 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L24Q0WX57 530 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 NOLC1Q14978 699 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 DALRD3Q5D0E6 543 aaKnown RBP16.45■□□□□ 0.22
CLIP1-216ENST00000541410 USP17L6PQ6QN14 398 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 SPATA20Q8TB22 786 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 LRRC15Q8TF66 581 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 CNTNAP1P78357 1384 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 ATRNL1Q5VV63 1379 aa16.45■□□□□ 0.22
CLIP1-216ENST00000541410 NPM3O75607 178 aaKnown RBP16.44■□□□□ 0.22
CLIP1-216ENST00000541410 EGFRP00533 1210 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 SERPINC1P01008 464 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 OR52Z1P0C646 297 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 CDC25BP30305 580 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 UBA7P41226 1012 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 ZYXQ15942 572 aaKnown RBP16.44■□□□□ 0.22
CLIP1-216ENST00000541410 USH1GQ495M9 461 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 TMC6Q7Z403 805 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 MKL1Q969V6 931 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 BCS1LQ9Y276 419 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 NFE2L3Q9Y4A8 694 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 KIF13BQ9NQT8 1826 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 ESYT2A0FGR8 921 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 TXLNAP40222 546 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 CDC37Q16543 378 aaPredicted RBP16.44■□□□□ 0.22
CLIP1-216ENST00000541410 ACER1Q8TDN7 264 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 MAPK8IP1Q9UQF2 711 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 PCDHA1Q9Y5I3 950 aa16.44■□□□□ 0.22
CLIP1-216ENST00000541410 TMEM232C9JQI7 657 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 NAALADL2Q58DX5 795 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 KIAA1755Q5JYT7 1200 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 DNTTIP2Q5QJE6 756 aaKnown RBP16.43■□□□□ 0.22
CLIP1-216ENST00000541410 KIAA1524Q8TCG1 905 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 TAOK3Q9H2K8 898 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 PSTPIP2Q9H939 334 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 DISC1Q9NRI5 854 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 SAMSN1Q9NSI8 373 aaKnown RBP16.43■□□□□ 0.22
CLIP1-216ENST00000541410 PSDA5PKW4 1024 aaPredicted RBP16.43■□□□□ 0.22
CLIP1-216ENST00000541410 OFD1O75665 1012 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 POLD1P28340 1107 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 DHX8Q14562 1220 aaKnown RBP16.43■□□□□ 0.22
CLIP1-216ENST00000541410 RRAGBQ5VZM2 374 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 MLKLQ8NB16 471 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 CCDC34Q96HJ3 373 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 RIC8AQ9NPQ8 531 aa16.43■□□□□ 0.22
CLIP1-216ENST00000541410 ARFGEF1Q9Y6D6 1849 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 WNT10BO00744 389 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 UBASH3AP57075 661 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 GRIPAP1Q4V328 841 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 LRRC8AQ8IWT6 810 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 CUL5Q93034 780 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 R3HCC1Q9Y3T6 440 aaKnown RBP16.42■□□□□ 0.22
CLIP1-216ENST00000541410 NFKBIEO00221 500 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 TPM3P06753 285 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 DCAF4Q8WV16 495 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 FAM151AQ8WW52 585 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 JDP2Q8WYK2 163 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 MTMR8Q96EF0 704 aa16.42■□□□□ 0.22
CLIP1-216ENST00000541410 hCG_1984214I3L0E3 225 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 TGFB2P61812 414 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 RASSF7Q02833 373 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 CALCRLQ16602 461 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 CIAPIN1Q6FI81 312 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 ZNF713Q8N859 430 aaPredicted RBP16.41■□□□□ 0.22
CLIP1-216ENST00000541410 TRIML1Q8N9V2 468 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.41■□□□□ 0.22
CLIP1-216ENST00000541410 POTEMA6NI47 508 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 PLCG1P19174 1290 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 CDK11BP21127 795 aaKnown RBP16.41■□□□□ 0.22
CLIP1-216ENST00000541410 GOLGA8FQ08AF8 430 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 GOLGA8DPQ0D2H9 430 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 CABP7Q86V35 215 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 GSDMAQ96QA5 445 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 GLIS2Q9BZE0 524 aaPredicted RBP16.41■□□□□ 0.22
CLIP1-216ENST00000541410 MTFR1LQ9H019 292 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 GDAQ9Y2T3 454 aa16.41■□□□□ 0.22
CLIP1-216ENST00000541410 ASTN2O75129 1339 aaPredicted RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 HERC5Q9UII4 1024 aaKnown RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 CTNND2Q9UQB3 1225 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 LAD1O00515 517 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 GTPBP6O43824 516 aaPredicted RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 BMP3P12645 472 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 PRPHP41219 470 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 CLK2P49760 499 aaKnown RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 MRPL12P52815 198 aaKnown RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 PPP4R3BQ5MIZ7 849 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 FAM177A1Q8N128 213 aaPredicted RBP16.4■□□□□ 0.22
CLIP1-216ENST00000541410 AGBL3Q8NEM8 1001 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 MYOZ2Q9NPC6 264 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 DACH1Q9UI36 760 aa16.4■□□□□ 0.22
CLIP1-216ENST00000541410 FER1L6Q2WGJ9 1857 aa16.39■□□□□ 0.22
CLIP1-216ENST00000541410 PPP1R3GB7ZBB8 358 aa16.39■□□□□ 0.21
CLIP1-216ENST00000541410 RPN1P04843 607 aaKnown RBP16.39■□□□□ 0.21
CLIP1-216ENST00000541410 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.39■□□□□ 0.21
CLIP1-216ENST00000541410 SAMD7Q7Z3H4 446 aa16.39■□□□□ 0.21
CLIP1-216ENST00000541410 P2RX7Q99572 595 aaKnown RBP16.39■□□□□ 0.21
CLIP1-216ENST00000541410 MMTAG2Q9BU76 263 aaKnown RBP16.39■□□□□ 0.21
CLIP1-216ENST00000541410 INTS13Q9NVM9 706 aa16.39■□□□□ 0.21
CLIP1-216ENST00000541410 ZBTB21Q9ULJ3 1066 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms