RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 H7C1D1 291 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 TRAF5O00463 557 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 ZYXQ15942 572 aaKnown RBP16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 GRIPAP1Q4V328 841 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 BPIFA3Q9BQP9 254 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 A0A0U1RQJ8 604 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 IKBKBO14920 756 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 PPP6R2O75170 966 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 NTRK3Q16288 839 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 TRIM65Q6PJ69 517 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 SLF2Q8IX21 1173 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 CRACR2BQ8N4Y2 399 aaPredicted RBP16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 ATRIPQ8WXE1 791 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 GDAP1L1Q96MZ0 367 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 DEFB129Q9H1M3 183 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 ZNF408Q9H9D4 720 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 MAN1B1Q9UKM7 699 aa16.15■□□□□ 0.18
SFSWAP-210ENST00000541286 SPDYE2Q495Y8 402 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 TOGARAM2Q6ZUX3 1019 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 VSTM4Q8IW00 320 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 PES1O00541 588 aaKnown RBP16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 RHOXF2BP0C7M4 288 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 RASA1P20936 1047 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 IBSPP21815 317 aaPredicted RBP16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 MTF1Q14872 753 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 RHOXF2Q9BQY4 288 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 GLIS2Q9BZE0 524 aaPredicted RBP16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 TUBE1Q9UJT0 475 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 PPP2R2CQ9Y2T4 447 aa16.14■□□□□ 0.17
SFSWAP-210ENST00000541286 GOLGA8HP0CJ92 632 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 TOB1P50616 345 aaPredicted RBP16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 LRRC47Q8N1G4 583 aaKnown RBP16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 CCDC102AQ96A19 550 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 HPSEQ9Y251 543 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 PPP2R3AQ06190 1150 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 ALX1Q15699 326 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 EPSTI1Q96J88 318 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 CSRNP2Q9H175 543 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 SUGT1Q9Y2Z0 365 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 TNKSO95271 1327 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 SHMT1P34896 483 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 LEKR1Q6ZMV7 388 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 FBXL16Q8N461 479 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 ENAHQ8N8S7 591 aaPredicted RBP16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 SRRTQ9BXP5 876 aaKnown RBP16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 SERPINB13Q9UIV8 391 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 DNAH12Q6ZR08 3092 aa16.13■□□□□ 0.17
SFSWAP-210ENST00000541286 ZSCAN12O43309 604 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 ZNF174Q15697 407 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 LONRF2Q1L5Z9 754 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 INTS13Q9NVM9 706 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 CWC15Q9P013 229 aaKnown RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 FAN1Q9Y2M0 1017 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 MAST2Q6P0Q8 1798 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 MKI67P46013 3256 aaKnown RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 MMP1P03956 469 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 ZNF280AP59817 542 aaPredicted RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 CCDC12Q8WUD4 166 aaPredicted RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 STAG1Q8WVM7 1258 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 ZKSCAN4Q969J2 545 aaPredicted RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 ARPP21Q9UBL0 812 aaPredicted RBP16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 MAPK8IP1Q9UQF2 711 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 TIAM2Q8IVF5 1701 aa16.12■□□□□ 0.17
SFSWAP-210ENST00000541286 TAL1P17542 331 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 DPY19L2Q6NUT2 758 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 ZBED3Q96IU2 234 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 FUT8Q9BYC5 575 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 V9GY48 417 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 MYO3BQ8WXR4 1341 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 PSME4Q14997 1843 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 FMNL1O95466 1100 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 TSPY3P0CV98 308 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 TSPY8P0CW00 308 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 SPICE1Q8N0Z3 855 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 CNKSR2Q8WXI2 1034 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 WASF1Q92558 559 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 CEP95Q96GE4 821 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 JRKLQ9Y4A0 524 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 NAV1Q8NEY1 1877 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 DDX60LQ5H9U9 1706 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 TEX33O43247 280 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 GRIN3BO60391 1043 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 VEGFAP15692 232 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 PLCG2P16885 1265 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 INPP5BP32019 993 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 CCT6AP40227 531 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 ICE2Q659A1 982 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 ZNF654Q8IZM8 581 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 KRT23Q9C075 422 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 TMOD2Q9NZR1 351 aa16.11■□□□□ 0.17
SFSWAP-210ENST00000541286 GLTPD2A6NH11 291 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 CCP110O43303 1012 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 EPHX2P34913 555 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 SEPT2Q15019 361 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 FANCBQ8NB91 859 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 BLZF1Q9H2G9 400 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 SOWAHDA6NJG2 315 aa16.1■□□□□ 0.17
SFSWAP-210ENST00000541286 EFCAB8A8MWE9 144 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms