RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 ZNF648Q5T619 568 aaPredicted RBP9.53□□□□□ -0.88
YBX3-210ENST00000540975 GTF2IRD2BQ6EKJ0 949 aa9.53□□□□□ -0.88
YBX3-210ENST00000540975 GTF2IRD2Q86UP8 949 aa9.53□□□□□ -0.88
YBX3-210ENST00000540975 FAM84AQ96KN4 292 aa9.53□□□□□ -0.88
YBX3-210ENST00000540975 DCP1AQ9NPI6 582 aaPredicted RBP9.53□□□□□ -0.88
YBX3-210ENST00000540975 CYP26B1Q9NR63 512 aa9.53□□□□□ -0.88
YBX3-210ENST00000540975 GTF2F1P35269 517 aaKnown RBP eCLIP9.52□□□□□ -0.89
YBX3-210ENST00000540975 PDE6BP35913 854 aa9.52□□□□□ -0.89
YBX3-210ENST00000540975 COPS5Q92905 334 aa9.52□□□□□ -0.89
YBX3-210ENST00000540975 TRIM55Q9BYV6 548 aa9.52□□□□□ -0.89
YBX3-210ENST00000540975 EPN3Q9H201 632 aa9.52□□□□□ -0.89
YBX3-210ENST00000540975 IMPACTQ9P2X3 320 aa9.52□□□□□ -0.89
YBX3-210ENST00000540975 CYP4F8P98187 520 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 MVKQ03426 396 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 RBL2Q08999 1139 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 LAPTM5Q13571 262 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 ZNF227Q86WZ6 799 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 NUP43Q8NFH3 380 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 NLGN2Q8NFZ4 835 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 NKX2-4Q9H2Z4 354 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 EPB41L4BQ9H329 900 aa9.51□□□□□ -0.89
YBX3-210ENST00000540975 ZNF552Q9H707 407 aaPredicted RBP9.51□□□□□ -0.89
YBX3-210ENST00000540975 A0A1W2PQ27 194 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 A0A1W2PQ64 194 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 A0A1W2PQC6 194 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 A0A1W2PQD8 194 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 TBX1O43435 398 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 SCRN1Q12765 414 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 SLC10A6Q3KNW5 377 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 FBXO15Q8NCQ5 510 aaPredicted RBP9.5□□□□□ -0.89
YBX3-210ENST00000540975 GPRC5CQ9NQ84 441 aa9.5□□□□□ -0.89
YBX3-210ENST00000540975 OR14I1A6ND48 311 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 CAPNS1P04632 268 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 PAMP19021 973 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 L1CAMP32004 1257 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 ARL4AP40617 200 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 ERVFRD-1P60508 538 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 CYP4F3Q08477 520 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 ADGRF1Q5T601 910 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 KSR1Q8IVT5 923 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 ARMC5Q96C12 935 aa9.49□□□□□ -0.89
YBX3-210ENST00000540975 NPHP3-ACAD11A0A0J9YXS1 232 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 MSL3P1P0C860 447 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 SDHBP21912 280 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 HOXC12P31275 282 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 SYDE1Q6ZW31 735 aaPredicted RBP9.48□□□□□ -0.89
YBX3-210ENST00000540975 ZNF605Q86T29 641 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 CPNE8Q86YQ8 564 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 BTN2A2Q8WVV5 523 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 HIRIP3Q9BW71 556 aaPredicted RBP9.48□□□□□ -0.89
YBX3-210ENST00000540975 KRTAP9-2Q9BYQ4 174 aa9.48□□□□□ -0.89
YBX3-210ENST00000540975 C8AP07357 584 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 PLS3P13797 630 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 NBPF6Q5VWK0 638 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 NBPF4Q96M43 638 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 CCDC140Q96MF4 163 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 SLC38A3Q99624 504 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 PDLIM7Q9NR12 457 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 CLEC1BQ9P126 229 aa9.47□□□□□ -0.89
YBX3-210ENST00000540975 TRBV23OR9-2A0A075B6M9 112 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 A0A1W2PQU0 124 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 AGRPO00253 132 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 U2SURPO15042 1029 aaKnown RBP9.46□□□□□ -0.9
YBX3-210ENST00000540975 PPP1R11O60927 126 aaPredicted RBP9.46□□□□□ -0.9
YBX3-210ENST00000540975 THBDP07204 575 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 CORO7P57737 925 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 SF1Q15637 639 aaKnown RBP9.46□□□□□ -0.9
YBX3-210ENST00000540975 FRS2Q8WU20 508 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 SLC26A8Q96RN1 970 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 GOLGA2P5Q9HBQ8 144 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 MSRB2Q9Y3D2 182 aa9.46□□□□□ -0.9
YBX3-210ENST00000540975 MYOCOSA0A1B0GUC4 107 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 PEX10O60683 326 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 MPOP05164 745 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 SCG5P05408 212 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 SF3A1Q15459 793 aaKnown RBP9.45□□□□□ -0.9
YBX3-210ENST00000540975 ST13P5Q8NFI4 369 aaPredicted RBP9.45□□□□□ -0.9
YBX3-210ENST00000540975 KCNN1Q92952 543 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 MMP19Q99542 508 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 MCOLN1Q9GZU1 580 aa9.45□□□□□ -0.9
YBX3-210ENST00000540975 C7orf72A4D263 438 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.44□□□□□ -0.9
YBX3-210ENST00000540975 SNRPB2P08579 225 aaKnown RBP9.44□□□□□ -0.9
YBX3-210ENST00000540975 PPP2R2AP63151 447 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 YBX1P67809 324 aaKnown RBP9.44□□□□□ -0.9
YBX3-210ENST00000540975 BHLHE22Q8NFJ8 381 aaPredicted RBP9.44□□□□□ -0.9
YBX3-210ENST00000540975 NPLOC4Q8TAT6 608 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 SGSM3Q96HU1 749 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 CCDC113Q9H0I3 377 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 TNFRSF12AQ9NP84 129 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 SIRPGQ9P1W8 387 aa9.44□□□□□ -0.9
YBX3-210ENST00000540975 A0A1W2PQJ5 194 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 ARNTLO00327 626 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 CPP00450 1065 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 ECI1P42126 302 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 GRIA2P42262 883 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 ZNF124Q15973 351 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 KREMEN2Q8NCW0 462 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 KLHL14Q9P2G3 628 aa9.43□□□□□ -0.9
YBX3-210ENST00000540975 HRKO00198 91 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms