RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SYNE3Q6ZMZ3 975 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 ANKMY2Q8IV38 441 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 NEDD1Q8NHV4 660 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 SCG3Q8WXD2 468 aaKnown RBP7.55□□□□□ -1.2
USP28-207ENST00000538475 ACDQ96AP0 544 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 CRACR2AQ9BSW2 395 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 OXCT2Q9BYC2 517 aaPredicted RBP7.55□□□□□ -1.2
USP28-207ENST00000538475 HPSEQ9Y251 543 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 HCN4Q9Y3Q4 1203 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 NEO1Q92859 1461 aa7.55□□□□□ -1.2
USP28-207ENST00000538475 DIP2CQ9Y2E4 1556 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 UTYO14607 1347 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 PIK3C2AO00443 1686 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 EML1O00423 815 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 PES1O00541 588 aaKnown RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 EIF3HO15372 352 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP28-207ENST00000538475 MEFVO15553 781 aaPredicted RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 MAP4K4O95819 1239 aaPredicted RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 SYF2O95926 243 aaKnown RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 SLC8A1P32418 973 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 NF2P35240 595 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 SYKP43405 635 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 PIP4K2AP48426 406 aaPredicted RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 NDUFA8P51970 172 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 ICA1Q05084 483 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 SCRN1Q12765 414 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 IDI1Q13907 227 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 NR1I3Q14994 352 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 SLC39A14Q15043 492 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 TAF7Q15545 349 aaPredicted RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 SH3PXD2AQ5TCZ1 1133 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 LRRC69Q6ZNQ3 347 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 Q6ZUG5 572 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 MCM10Q7L590 875 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 PPFIBP1Q86W92 1011 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 EGFL6Q8IUX8 553 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 TEX11Q8IYF3 940 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 MIEF2Q96C03 454 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 KLRG1Q96E93 195 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 FMNL2Q96PY5 1086 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 SH3GL2Q99962 352 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 DSCC1Q9BVC3 393 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 CAPS2Q9BXY5 557 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 BICC1Q9H694 974 aaKnown RBP7.54□□□□□ -1.2
USP28-207ENST00000538475 NDFIP2Q9NV92 336 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 MCM8Q9UJA3 840 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 HPCAL4Q9UM19 191 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 CARMIL3Q8ND23 1372 aa7.54□□□□□ -1.2
USP28-207ENST00000538475 IGSF1Q8N6C5 1336 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 SH3TC1Q8TE82 1336 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 AGLP35573 1532 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 RICTORQ6R327 1708 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 MYH2Q9UKX2 1941 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 GOLGA6L7A0A1B0GV03 622 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 ANO9A1A5B4 782 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 PTPDC1A2A3K4 754 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 GOLGA6CA6NDK9 693 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 GNAT3A8MTJ3 354 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 JAK2O60674 1132 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 LGR5O75473 907 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 ARHGEF15O94989 841 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 GOLGA6DP0CG33 693 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 MAPTP10636 758 aaKnown RBP7.53□□□□□ -1.2
USP28-207ENST00000538475 NEFHP12036 1026 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 ATP5JP18859 108 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 TNFRSF8P28908 595 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 SSR1P43307 286 aaKnown RBP7.53□□□□□ -1.2
USP28-207ENST00000538475 FNTAP49354 379 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 VSNL1P62760 191 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 CTBSQ01459 385 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 EXOSC10Q01780 885 aaKnown RBP7.53□□□□□ -1.2
USP28-207ENST00000538475 MAP2K1Q02750 393 aaPredicted RBP7.53□□□□□ -1.2
USP28-207ENST00000538475 G3BP1Q13283 466 aaKnown RBP eCLIP7.53□□□□□ -1.2
USP28-207ENST00000538475 SART3Q15020 963 aaKnown RBP7.53□□□□□ -1.2
USP28-207ENST00000538475 NBPF9Q3BBW0 867 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 FILIP1LQ4L180 1135 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 BEND3Q5T5X7 828 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 ANO1Q5XXA6 986 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 NME9Q86XW9 330 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 OTUD6BQ8N6M0 293 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 TCP11Q8WWU5 503 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 PNKPQ96T60 521 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 PSMD1Q99460 953 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 FSD1Q9BTV5 496 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 HELLSQ9NRZ9 838 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 GOLGA6AQ9NYA3 693 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 STK26Q9P289 416 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 MYO6Q9UM54 1294 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 FLT4P35916 1363 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 COL15A1P39059 1388 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 PLEKHG1Q9ULL1 1385 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 LMTK3Q96Q04 1460 aa7.53□□□□□ -1.2
USP28-207ENST00000538475 SIPA1L3O60292 1781 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 CASZ1Q86V15 1759 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 A0A1B0GVL5 298 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 KLHL33A6NCF5 533 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 RNF225M0QZC1 329 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 PSMD14O00487 310 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 EZRP15311 586 aaKnown RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 PFKFB1P16118 471 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms