RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 TTLL1O95922 423 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 KCNA3P22001 575 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 TCP10Q12799 353 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 MFSD10Q14728 455 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 NYAP1Q6ZVC0 841 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 RRP36Q96EU6 259 aaKnown RBP12.18□□□□□ -0.46
CLIP1-210ENST00000538120 IKBKBO14920 756 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 SHROOM1Q2M3G4 852 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-210ENST00000538120 KMT5BQ4FZB7 885 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 HOMER1Q86YM7 354 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 SUPT20HQ8NEM7 779 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 DHX58Q96C10 678 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 SIPA1L1O43166 1804 aa12.18□□□□□ -0.46
CLIP1-210ENST00000538120 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 PPIP5K2O43314 1243 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 KIF20AO95235 890 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 SLFN14P0C7P3 912 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 RBM5P52756 815 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 NAPAP54920 295 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 PTPN14Q15678 1187 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 ASPRV1Q53RT3 343 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 KIF18AQ8NI77 898 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 CGNQ9P2M7 1197 aaKnown RBP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 GREB1LQ9C091 1923 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 CCDC194A0A1B0GVG4 234 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 SMCO2A6NFE2 343 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 ZNF543Q08ER8 600 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 MORC3Q14149 939 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 E2F4Q16254 413 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 INF2Q27J81 1249 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 ARL6IP4Q66PJ3 421 aaKnown RBP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 KANK3Q6NY19 840 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 TMC2Q8TDI7 906 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 OTUD5Q96G74 571 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 PAGE5Q96GU1 130 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 TMEM60Q9H2L4 133 aa12.17□□□□□ -0.46
CLIP1-210ENST00000538120 DHX36Q9H2U1 1008 aaKnown RBP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 HOOK1Q9UJC3 728 aaKnown RBP12.17□□□□□ -0.46
CLIP1-210ENST00000538120 DSG2Q14126 1118 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 TTBK2Q6IQ55 1244 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 TTLL6Q8N841 843 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 PRMT6Q96LA8 375 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-210ENST00000538120 CCDC17Q96LX7 622 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 TRAIPQ9BWF2 469 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 TDRD3Q9H7E2 651 aaKnown RBP12.16□□□□□ -0.46
CLIP1-210ENST00000538120 SLC24A3Q9HC58 644 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 GPCPD1Q9NPB8 672 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 PI4KBQ9UBF8 816 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 MPHOSPH10O00566 681 aaKnown RBP12.16□□□□□ -0.46
CLIP1-210ENST00000538120 DPEP1P16444 411 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 ELF2Q15723 593 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 CFAP100Q494V2 611 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 TATDN1Q6P1N9 297 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 SIAH1Q8IUQ4 282 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 CCAR2Q8N163 923 aaKnown RBP12.16□□□□□ -0.46
CLIP1-210ENST00000538120 SMARCE1Q969G3 411 aa12.16□□□□□ -0.46
CLIP1-210ENST00000538120 ESYT2A0FGR8 921 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 CASP1P29466 404 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 BAG6P46379 1132 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 FBXO38Q6PIJ6 1188 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 ZNF771Q7L3S4 317 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 CCDC12Q8WUD4 166 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 DDX27Q96GQ7 796 aaKnown RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 MED15Q96RN5 788 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 JMJD4Q9H9V9 463 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 C6orf50Q9HD87 102 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 SEC63Q9UGP8 760 aaKnown RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 COL4A5P29400 1685 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 PPP1R11O60927 126 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 ATP1A3P13637 1013 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 LONP1P36776 959 aaKnown RBP12.15□□□□□ -0.46
CLIP1-210ENST00000538120 AFMP43652 599 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 MYL5Q02045 173 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 DPYDQ12882 1025 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 GRIPAP1Q4V328 841 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 CCDC93Q567U6 631 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 PDXDC2PQ6P474 469 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 ADGRF4Q8IZF3 695 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 LRRN4CLQ8ND94 238 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 MKL1Q969V6 931 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 COA7Q96BR5 231 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 MTRQ99707 1265 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 SCUBE2Q9NQ36 999 aa12.15□□□□□ -0.46
CLIP1-210ENST00000538120 LMOD1P29536 600 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 GNA11P29992 359 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 JAG1P78504 1218 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 FOXK1P85037 733 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 FMR1Q06787 632 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 CERKLQ49MI3 558 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 KRT25Q7Z3Z0 450 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 CCDC125Q86Z20 511 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 TRIML1Q8N9V2 468 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 GMLQ99445 158 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 XPO4Q9C0E2 1151 aaKnown RBP12.14□□□□□ -0.47
CLIP1-210ENST00000538120 TMEM260Q9NX78 707 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 IFNKQ9P0W0 207 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 ATRNL1Q5VV63 1379 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 hCG_1984214I3L0E3 225 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 EDIL3O43854 480 aa12.14□□□□□ -0.47
CLIP1-210ENST00000538120 EEF2P13639 858 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms