RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 DNAJB2P25686 324 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 CNTN2Q02246 1040 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 TNFAIP2Q03169 654 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 LRRC47Q8N1G4 583 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 SYMPKQ92797 1274 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 RANBP17Q9H2T7 1088 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 VTA1Q9NP79 307 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 HELLSQ9NRZ9 838 aa13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 ZHX1Q9UKY1 873 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-206ENST00000535668 TLR3O15455 904 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 AAMPQ13685 434 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 RGS22Q8NE09 1264 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 DCAF4Q8WV16 495 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 EVI5LQ96CN4 794 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 TTC14Q96N46 770 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 TRERF1Q96PN7 1200 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 SEC62Q99442 399 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 ZNF576Q9H609 170 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 RNF146Q9NTX7 359 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 PRR12Q9ULL5 1215 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 CTDP1Q9Y5B0 961 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 GRIN2DO15399 1336 aa13.29□□□□□ -0.28
CLSTN3-206ENST00000535668 RAD21O60216 631 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 SNHG28P0DPA3 235 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 FOSL2P15408 326 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 MCCP23508 829 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 EDNRBP24530 442 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 HDAC1Q13547 482 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 GRIN2CQ14957 1233 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 FSCN1Q16658 493 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 DUSP28Q4G0W2 176 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 TSHZ3Q63HK5 1081 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 SAMD1Q6SPF0 538 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 MYLIPQ8WY64 445 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 TIFAQ96CG3 184 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 VWCEQ96DN2 955 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 AGBL1Q96MI9 1066 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 FAM161BQ96MY7 647 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 IL23AQ9NPF7 189 aa13.28□□□□□ -0.28
CLSTN3-206ENST00000535668 LRRC37A2A6NM11 1700 aa13.27□□□□□ -0.28
CLSTN3-206ENST00000535668 ZEB2O60315 1214 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 PFKMP08237 780 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 CSF2RAP15509 400 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 SMPD1P17405 629 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 POU3F3P20264 500 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 TLK2Q86UE8 772 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 OTUD7AQ8TE49 926 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 FSD1Q9BTV5 496 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 NOC4LQ9BVI4 516 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 PBX4Q9BYU1 374 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 ADD3Q9UEY8 706 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 WDR19Q8NEZ3 1342 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 LCTP09848 1927 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 SCN10AQ9Y5Y9 1956 aa13.27□□□□□ -0.29
CLSTN3-206ENST00000535668 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 NKRFO15226 690 aaKnown RBP eCLIP13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 ITGA7Q13683 1181 aa13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 RAB30Q15771 203 aa13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 ZNF365Q70YC5 407 aa13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 DNERQ8NFT8 737 aa13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 MTIF3Q9H2K0 278 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 STX8Q9UNK0 236 aa13.26□□□□□ -0.29
CLSTN3-206ENST00000535668 TSPY2A6NKD2 308 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 FGAP02671 866 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 SUPT20HL2P0C7V6 817 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 PDE1AP54750 535 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 MUM1L1Q5H9M0 696 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 CXCL17Q6UXB2 119 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 ATXN2LQ8WWM7 1075 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 ANKS1AQ92625 1134 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 AP5M1Q9H0R1 490 aa13.25□□□□□ -0.29
CLSTN3-206ENST00000535668 A6NJR5 290 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 KPNA6O60684 536 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 PTPN11Q06124 597 aaPredicted RBP13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 MCMDC2Q4G0Z9 681 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 TJAP1Q5JTD0 557 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 KCTD1Q719H9 257 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 RPUSD2Q8IZ73 545 aaKnown RBP13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 CLEC4DQ8WXI8 215 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 TMEM47Q9BQJ4 181 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 ALDH8A1Q9H2A2 487 aaPredicted RBP13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 HIPK3Q9H422 1215 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 POLR3EQ9NVU0 708 aa13.24□□□□□ -0.29
CLSTN3-206ENST00000535668 PITPNM1O00562 1244 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 NMT2O60551 498 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 FGBP02675 491 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 PDHBP11177 359 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 ALAS1P13196 640 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 ALDH5A1P51649 535 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 PURAQ00577 322 aaKnown RBP13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 BEX3Q00994 111 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 VPS53Q5VIR6 699 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 NFRKBQ6P4R8 1299 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 DGKHQ86XP1 1220 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 STK11IPQ8N1F8 1099 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 WNT8AQ9H1J5 351 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 OSBPL3Q9H4L5 887 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms