RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 STX8Q9UNK0 236 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 GOLGA8HP0CJ92 632 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 GRIK5Q16478 980 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 TXLNBQ8N3L3 684 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 MSL3Q8N5Y2 521 aaKnown RBP21.57■■□□□ 1.04
VPS28-213ENST00000530983 CSGALNACT2Q8N6G5 542 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 EEF2KMTQ96G04 330 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 TUBGCP2Q9BSJ2 902 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 ADAM21Q9UKJ8 722 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 CDK5RAP2Q96SN8 1893 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 TNRC6CQ9HCJ0 1690 aaKnown RBP21.57■■□□□ 1.04
VPS28-213ENST00000530983 RASSF10A6NK89 507 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 ENC1O14682 589 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 TXNRD1Q16881 649 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 CABP7Q86V35 215 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 NOC3LQ8WTT2 800 aaKnown RBP21.57■■□□□ 1.04
VPS28-213ENST00000530983 ZMYND12Q9H0C1 365 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 CUEDC2Q9H467 287 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 AGPAT5Q9NUQ2 364 aa21.57■■□□□ 1.04
VPS28-213ENST00000530983 FEZ2Q9UHY8 353 aaPredicted RBP21.57■■□□□ 1.04
VPS28-213ENST00000530983 RASA1P20936 1047 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 ZNF444Q8N0Y2 327 aaPredicted RBP21.56■■□□□ 1.04
VPS28-213ENST00000530983 TGFBRAP1Q8WUH2 860 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 TRIM9Q9C026 710 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 CPVLQ9H3G5 476 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 MAGEF1Q9HAY2 307 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 EXOC1Q9NV70 894 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 HDAC6Q9UBN7 1215 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 GPS2Q13227 327 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 MAPK8IP2Q13387 824 aaPredicted RBP21.56■■□□□ 1.04
VPS28-213ENST00000530983 TSR1Q2NL82 804 aaKnown RBP21.56■■□□□ 1.04
VPS28-213ENST00000530983 TPTE2Q6XPS3 522 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 AK8Q96MA6 479 aa21.56■■□□□ 1.04
VPS28-213ENST00000530983 KLRF2D3W0D1 207 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 ATP1A1P05023 1023 aaKnown RBP21.55■■□□□ 1.04
VPS28-213ENST00000530983 OR52Z1P0C646 297 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 KLK7P49862 253 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 STK4Q13043 487 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 CCDC122Q5T0U0 273 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 ANKRD40Q6AI12 368 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 WDR66Q8TBY9 1149 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 P2RX5Q93086 422 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 EXOC4Q96A65 974 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 CCNE1P24864 410 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 LETM2Q2VYF4 491 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 MUM1L1Q5H9M0 696 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 ZNF662Q6ZS27 426 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 AMOTL1Q8IY63 956 aa21.55■■□□□ 1.04
VPS28-213ENST00000530983 CCNT1O60563 726 aaKnown RBP21.54■■□□□ 1.04
VPS28-213ENST00000530983 PPP4CP60510 307 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 PDE4DQ08499 809 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 WDR93Q6P2C0 686 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 PTF1AQ7RTS3 328 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 CNOT6LQ96LI5 555 aaKnown RBP21.54■■□□□ 1.04
VPS28-213ENST00000530983 LZTS2Q9BRK4 669 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 SPZ1Q9BXG8 430 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 SAP30BPQ9UHR5 308 aaKnown RBP21.54■■□□□ 1.04
VPS28-213ENST00000530983 N4BP1O75113 896 aaKnown RBP21.54■■□□□ 1.04
VPS28-213ENST00000530983 BAG3O95817 575 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 TUBBP07437 444 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 TRIM21P19474 475 aaKnown RBP21.54■■□□□ 1.04
VPS28-213ENST00000530983 NAPAP54920 295 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 KRT83P78385 493 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 CASP8Q14790 479 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 MAPKAPK5Q8IW41 473 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 SNED1Q8TER0 1413 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 C7orf25Q9BPX7 421 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 GBP3Q9H0R5 595 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 TSPYL1Q9H0U9 437 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 PSD3Q9NYI0 1048 aa21.54■■□□□ 1.04
VPS28-213ENST00000530983 DDX60LQ5H9U9 1706 aaKnown RBP21.53■■□□□ 1.04
VPS28-213ENST00000530983 RCCD1A6NED2 376 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 NUTM2BA6NNL0 878 aaPredicted RBP21.53■■□□□ 1.04
VPS28-213ENST00000530983 NUTM2EB1AL46 878 aaPredicted RBP21.53■■□□□ 1.04
VPS28-213ENST00000530983 RPS6KA4O75676 772 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 FCER1AP12319 257 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 TBC1D8BQ0IIM8 1120 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 NONOQ15233 471 aaKnown RBP eCLIP21.53■■□□□ 1.04
VPS28-213ENST00000530983 MIIPQ5JXC2 388 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 PAPD7Q5XG87 772 aaKnown RBP21.53■■□□□ 1.04
VPS28-213ENST00000530983 KRT25Q7Z3Z0 450 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 RETREG2Q8NC44 543 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 NUP58Q9BVL2 599 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 ANKIB1Q9P2G1 1089 aa21.53■■□□□ 1.04
VPS28-213ENST00000530983 BICDL2A1A5D9 508 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 NKRFO15226 690 aaKnown RBP eCLIP21.52■■□□□ 1.04
VPS28-213ENST00000530983 ZPR1O75312 459 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 EIF3JO75822 258 aaKnown RBP21.52■■□□□ 1.04
VPS28-213ENST00000530983 ASIC1P78348 528 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 GSTO1P78417 241 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 ZBED6P86452 979 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 ZBTB9Q96C00 473 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 MMS19Q96T76 1030 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 TRIM34Q9BYJ4 488 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 LACRTQ9GZZ8 138 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 NHEJ1Q9H9Q4 299 aaPredicted RBP21.52■■□□□ 1.04
VPS28-213ENST00000530983 SAR1BQ9Y6B6 198 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 SRGAP2O75044 1071 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 KIAA1328Q86T90 577 aa21.52■■□□□ 1.04
VPS28-213ENST00000530983 JAKMIP2Q96AA8 810 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms