RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ISY1Q9ULR0 285 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 CEP131Q9UPN4 1083 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 AGTPBP1Q9UPW5 1226 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 SPTLC2O15270 562 aa24.27■■□□□ 1.48
VPS28-212ENST00000530836 TRAPPC10P48553 1259 aa24.27■■□□□ 1.48
VPS28-212ENST00000530836 GSE1Q14687 1217 aa24.27■■□□□ 1.48
VPS28-212ENST00000530836 TTBK2Q6IQ55 1244 aa24.27■■□□□ 1.48
VPS28-212ENST00000530836 CAVIN1Q6NZI2 390 aaKnown RBP24.27■■□□□ 1.48
VPS28-212ENST00000530836 CLIC4Q9Y696 253 aa24.27■■□□□ 1.48
VPS28-212ENST00000530836 PDHXO00330 501 aa24.26■■□□□ 1.47
VPS28-212ENST00000530836 TRPA1O75762 1119 aa24.26■■□□□ 1.47
VPS28-212ENST00000530836 TREML2Q5T2D2 321 aa24.26■■□□□ 1.47
VPS28-212ENST00000530836 FTOQ9C0B1 505 aaKnown RBP eCLIP24.26■■□□□ 1.471e-6■■□□□ 11.8
VPS28-212ENST00000530836 SAGE1Q9NXZ1 904 aa24.26■■□□□ 1.47
VPS28-212ENST00000530836 SLC45A1Q9Y2W3 748 aa24.26■■□□□ 1.47
VPS28-212ENST00000530836 MORC2Q9Y6X9 1032 aaPredicted RBP24.26■■□□□ 1.47
VPS28-212ENST00000530836 CA12O43570 354 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 PLA2G6O60733 806 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 PPP6R2O75170 966 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 BMP15O95972 392 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 ME1P48163 572 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 TRAF1Q13077 416 aa24.25■■□□□ 1.47
VPS28-212ENST00000530836 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.25■■□□□ 1.47
VPS28-212ENST00000530836 LPAR1Q92633 364 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 PGBD1Q96JS3 809 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 GZF1Q9H116 711 aaPredicted RBP24.24■■□□□ 1.47
VPS28-212ENST00000530836 GLT8D2Q9H1C3 349 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 SMCO2A6NFE2 343 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 TMEM232C9JQI7 657 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 SLC16A2P36021 539 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 STAT2P52630 851 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 KIAA1755Q5JYT7 1200 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 ADALQ6DHV7 355 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 TYW1BQ6NUM6 668 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 CHURC1Q8WUH1 139 aa24.24■■□□□ 1.47
VPS28-212ENST00000530836 A0A1W2PQ27 194 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 A0A1W2PQ64 194 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 A0A1W2PQD8 194 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 M0R2N6 131 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 VCAM1P19320 739 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 HOXA7P31268 230 aaPredicted RBP24.23■■□□□ 1.47
VPS28-212ENST00000530836 TOB1P50616 345 aaPredicted RBP24.23■■□□□ 1.47
VPS28-212ENST00000530836 IKQ13123 557 aaPredicted RBP24.23■■□□□ 1.47
VPS28-212ENST00000530836 PABPC4Q13310 644 aaKnown RBP eCLIP24.23■■□□□ 1.471e-7■■■□□ 18.8
VPS28-212ENST00000530836 SYDE2Q5VT97 1194 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 FAM160B2Q86V87 743 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 CFHR5Q9BXR6 569 aa24.23■■□□□ 1.47
VPS28-212ENST00000530836 LETM1O95202 739 aaPredicted RBP24.22■■□□□ 1.47
VPS28-212ENST00000530836 PTPAQ15257 358 aa24.22■■□□□ 1.47
VPS28-212ENST00000530836 CCDC194A0A1B0GVG4 234 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 HSPA1AP0DMV8 641 aaKnown RBP24.21■■□□□ 1.47
VPS28-212ENST00000530836 HSPA1BP0DMV9 641 aaKnown RBP24.21■■□□□ 1.47
VPS28-212ENST00000530836 TAF1CQ15572 869 aaPredicted RBP24.21■■□□□ 1.47
VPS28-212ENST00000530836 KRT25Q7Z3Z0 450 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 TEX2Q8IWB9 1127 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 SPICE1Q8N0Z3 855 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 PCDHA7Q9UN72 937 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 CDC37Q16543 378 aaPredicted RBP24.21■■□□□ 1.47
VPS28-212ENST00000530836 CCDC183Q5T5S1 534 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 NUP88Q99567 741 aaPredicted RBP24.21■■□□□ 1.47
VPS28-212ENST00000530836 ZFYVE28Q9HCC9 887 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 TMEM63CQ9P1W3 806 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 FEM1BQ9UK73 627 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 PCDHA6Q9UN73 950 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 PCDHA8Q9Y5H6 950 aa24.21■■□□□ 1.47
VPS28-212ENST00000530836 USP17L15C9J2P7 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L13C9JLJ4 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L11C9JVI0 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L18D6R9N7 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L22D6RA61 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L17D6RBQ6 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L19D6RCP7 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L20D6RJB6 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 TBC1D8O95759 1140 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 OSBPP22059 807 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 ADCY7P51828 1080 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 USP17L24Q0WX57 530 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 CRHR2Q13324 411 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 QRICH1Q2TAL8 776 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 PIK3AP1Q6ZUJ8 805 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 PARK7Q99497 189 aaKnown RBP24.2■■□□□ 1.46
VPS28-212ENST00000530836 AMNQ9BXJ7 453 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 RPAP3Q9H6T3 665 aaPredicted RBP24.2■■□□□ 1.46
VPS28-212ENST00000530836 PNMA3Q9UL41 463 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 PTPRFP10586 1907 aa24.2■■□□□ 1.46
VPS28-212ENST00000530836 WDR46O15213 610 aaKnown RBP24.19■■□□□ 1.46
VPS28-212ENST00000530836 CYP2C8P10632 490 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 MRPL12P52815 198 aaKnown RBP24.19■■□□□ 1.46
VPS28-212ENST00000530836 ZSCAN23Q3MJ62 389 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 FAM83BQ5T0W9 1011 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 CATSPERGQ6ZRH7 1159 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 ASCC2Q9H1I8 757 aaPredicted RBP24.19■■□□□ 1.46
VPS28-212ENST00000530836 R3HDMLQ9H3Y0 253 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 RIC8AQ9NPQ8 531 aa24.19■■□□□ 1.46
VPS28-212ENST00000530836 DDX19AQ9NUU7 478 aaKnown RBP24.19■■□□□ 1.46
VPS28-212ENST00000530836 ZNF445P59923 1031 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 TTC38Q5R3I4 469 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 MCTP2Q6DN12 878 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 CCDC73Q6ZRK6 1079 aa24.18■■□□□ 1.46
VPS28-212ENST00000530836 REXO1Q8N1G1 1221 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms