RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 PLEKHH3Q7Z736 793 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 FBXO11Q86XK2 927 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 RRP36Q96EU6 259 aaKnown RBP16.23■□□□□ 0.19
USF1-209ENST00000529476 MROH8Q9H579 483 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 CWC22Q9HCG8 908 aaKnown RBP16.23■□□□□ 0.19
USF1-209ENST00000529476 KIAA0100Q14667 2235 aaKnown RBP16.23■□□□□ 0.19
USF1-209ENST00000529476 ZNFX1Q9P2E3 1918 aaKnown RBP16.22■□□□□ 0.19
USF1-209ENST00000529476 PNMA6FA0A0J9YX94 578 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 COPB2P35606 906 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 MUM1L1Q5H9M0 696 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 IL27Q8NEV9 243 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 PHKBQ93100 1093 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 TRERF1Q96PN7 1200 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 AMNQ9BXJ7 453 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 RNF146Q9NTX7 359 aa16.22■□□□□ 0.19
USF1-209ENST00000529476 V9GY48 417 aaPredicted RBP16.22■□□□□ 0.19
USF1-209ENST00000529476 RBBP6Q7Z6E9 1792 aaKnown RBP16.21■□□□□ 0.19
USF1-209ENST00000529476 CPLX1O14810 134 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 DTNBO60941 627 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 IFNAR1P17181 557 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 ST3GAL1Q11201 340 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 TKFCQ3LXA3 575 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 CHST13Q8NET6 341 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 GTF3C6Q969F1 213 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 COA7Q96BR5 231 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 ZSCAN31Q96LW9 406 aaPredicted RBP16.21■□□□□ 0.19
USF1-209ENST00000529476 SEC63Q9UGP8 760 aaKnown RBP16.21■□□□□ 0.19
USF1-209ENST00000529476 PNMA2Q9UL42 364 aa16.21■□□□□ 0.19
USF1-209ENST00000529476 DLL1O00548 723 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 PTPREP23469 700 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 ARHGEF6Q15052 776 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 CLEC4DQ8WXI8 215 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 MMP19Q99542 508 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 SLC26A6Q9BXS9 759 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 ACAD9Q9H845 621 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 FBXO40Q9UH90 709 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 GABRQQ9UN88 632 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 PTPN22Q9Y2R2 807 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 PCDHA1Q9Y5I3 950 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 IVNS1ABPQ9Y6Y0 642 aa16.2■□□□□ 0.18
USF1-209ENST00000529476 ABCB11O95342 1321 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 ZNF236Q9UL36 1845 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 CENPFP49454 3210 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 SLC15A5A6NIM6 579 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 NFIBO00712 420 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 PRPF3O43395 683 aaKnown RBP16.19■□□□□ 0.18
USF1-209ENST00000529476 CTDNEP1O95476 244 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 GNRH1P01148 92 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 FCER1AP12319 257 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 PRKCZQ05513 592 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 GRB14Q14449 540 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 MORN1Q5T089 497 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 CPLX2Q6PUV4 134 aaKnown RBP16.19■□□□□ 0.18
USF1-209ENST00000529476 CCDC83Q8IWF9 413 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 GPKOWQ92917 476 aaPredicted RBP eCLIP16.19■□□□□ 0.18
USF1-209ENST00000529476 ARMC5Q96C12 935 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 SRRDQ9UH36 339 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 GJD2Q9UKL4 321 aa16.19■□□□□ 0.18
USF1-209ENST00000529476 BRCA2P51587 3418 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 STRNO43815 780 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 HOXD10P28358 340 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 ADORA2AP29274 412 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 MCM2P49736 904 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 SSRP1Q08945 709 aaKnown RBP16.18■□□□□ 0.18
USF1-209ENST00000529476 KCTD2Q14681 263 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 PKN1Q16512 942 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.18■□□□□ 0.18
USF1-209ENST00000529476 HEATR3Q7Z4Q2 680 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 ANKRD35Q8N283 1001 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 TMX3Q96JJ7 454 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 NUDT12Q9BQG2 462 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 RNF26Q9BY78 433 aaPredicted RBP16.18■□□□□ 0.18
USF1-209ENST00000529476 A1CFQ9NQ94 594 aaKnown RBP16.18■□□□□ 0.18
USF1-209ENST00000529476 SH2B1Q9NRF2 756 aaPredicted RBP16.18■□□□□ 0.18
USF1-209ENST00000529476 MRPL11Q9Y3B7 192 aaKnown RBP16.18■□□□□ 0.18
USF1-209ENST00000529476 PLXNA1Q9UIW2 1896 aa16.18■□□□□ 0.18
USF1-209ENST00000529476 SZT2Q5T011 3432 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 LCTP09848 1927 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 OPLAHO14841 1288 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 COBLO75128 1261 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 CDKL5O76039 1030 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 PGK2P07205 417 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 FLT3LGP49771 235 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 AKAP17AQ02040 695 aaKnown RBP16.17■□□□□ 0.18
USF1-209ENST00000529476 PFKFB3Q16875 520 aaPredicted RBP16.17■□□□□ 0.18
USF1-209ENST00000529476 WWC2Q6AWC2 1192 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 NSMFQ6X4W1 530 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 TRIM22Q8IYM9 498 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 ABRAQ8N0Z2 381 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 SOCS4Q8WXH5 440 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 TBC1D5Q92609 795 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 USP6NLQ92738 828 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 TRIOBPQ9H2D6 2365 aa16.17■□□□□ 0.18
USF1-209ENST00000529476 H0YGN5 161 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 SCG2P13521 617 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 CYP2B6P20813 491 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 TRAF1Q13077 416 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 MAP2K5Q13163 448 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 SLC30A10Q6XR72 485 aa16.16■□□□□ 0.18
USF1-209ENST00000529476 NSUN7Q8NE18 718 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms