RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ATP2A1O14983 1001 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 ADCY6O43306 1168 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 TLL1O43897 1013 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 MYOGP15173 224 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 BEX3Q00994 111 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 TNFAIP2Q03169 654 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 CPXCR1Q8N123 301 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 AP5M1Q9H0R1 490 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 RIPK3Q9Y572 518 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 SALL3Q9BXA9 1300 aa12.53□□□□□ -0.4
CPSF1-203ENST00000527916 CYP2D7A0A087X1C5 515 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 PATL2C9JE40 543 aaKnown RBP12.52□□□□□ -0.41
CPSF1-203ENST00000527916 CTAGE5O15320 804 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 CA3P07451 260 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 ACTN1P12814 892 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 MX1P20591 662 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 FSCN1Q16658 493 aaKnown RBP12.52□□□□□ -0.41
CPSF1-203ENST00000527916 TSHZ3Q63HK5 1081 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.52□□□□□ -0.41
CPSF1-203ENST00000527916 TICAM2Q86XR7 235 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 CCDC144CPQ8IYA2 1237 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 CHST13Q8NET6 341 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 TRPV6Q9H1D0 765 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 ZBTB47Q9UFB7 747 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-203ENST00000527916 UMODL1Q5DID0 1318 aa12.52□□□□□ -0.41
CPSF1-203ENST00000527916 GREB1LQ9C091 1923 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-203ENST00000527916 KIF28PB7ZC32 967 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 SMIM22K7EJ46 135 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 RFXAPO00287 272 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 GPAA1O43292 621 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 SUPT20HL2P0C7V6 817 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 OAZ1P54368 228 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 ANKRD45Q5TZF3 282 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 TLK2Q86UE8 772 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 NUP88Q99567 741 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-203ENST00000527916 WNT8AQ9H1J5 351 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 ZNF287Q9HBT7 754 aa12.51□□□□□ -0.41
CPSF1-203ENST00000527916 ASB14A6NK59 587 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 F5H6K3 240 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 B4GALT4O60513 344 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 KLRC3Q07444 240 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 ZMYM1Q5SVZ6 1142 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 ALYREFQ86V81 257 aaKnown RBP12.5□□□□□ -0.41
CPSF1-203ENST00000527916 PHOSPHO2Q8TCD6 241 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 OTUD7AQ8TE49 926 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-203ENST00000527916 ARNTL2Q8WYA1 636 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 KIFC2Q96AC6 838 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 SCLYQ96I15 445 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 SLC9A7Q96T83 725 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 CERS4Q9HA82 394 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 SLC38A10Q9HBR0 1119 aa12.5□□□□□ -0.41
CPSF1-203ENST00000527916 RAVER2Q9HCJ3 691 aaKnown RBP12.5□□□□□ -0.41
CPSF1-203ENST00000527916 LRRC37A2A6NM11 1700 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 GRIN2DO15399 1336 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 FAM86C2PA6NEL3 165 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 PI4K2BG5E9Z4 385 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 M0R2C6 588 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 DYNC1LI2O43237 492 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-203ENST00000527916 NDUFB10O96000 172 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 RASA1P20936 1047 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 TTLL4Q14679 1199 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 IFNL3Q8IZI9 196 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 EVI5LQ96CN4 794 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 FGD4Q96M96 766 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 AGBL1Q96MI9 1066 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 YTHDC1Q96MU7 727 aaKnown RBP12.49□□□□□ -0.41
CPSF1-203ENST00000527916 FSD1Q9BTV5 496 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.49□□□□□ -0.41
CPSF1-203ENST00000527916 NACAP1Q9BZK3 213 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 KATNBL1Q9H079 304 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 ALDH8A1Q9H2A2 487 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-203ENST00000527916 MKNK2Q9HBH9 465 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 NYAP2Q9P242 653 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 FEM1BQ9UK73 627 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 GNEQ9Y223 722 aaKnown RBP12.49□□□□□ -0.41
CPSF1-203ENST00000527916 WDFY4Q6ZS81 3184 aa12.49□□□□□ -0.41
CPSF1-203ENST00000527916 ASTN1O14525 1302 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-203ENST00000527916 MINDY4BA8MYZ0 360 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 APPP05067 770 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 FDX1P10109 184 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 RFC2P35250 354 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 TDO2P48775 406 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 PDE1AP54750 535 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 IQSEC1Q6DN90 963 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 DEFB128Q7Z7B8 93 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 SMC5Q8IY18 1101 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 ZNF444Q8N0Y2 327 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-203ENST00000527916 RWDD1Q9H446 243 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-203ENST00000527916 ACAD9Q9H845 621 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 EPB41L4AQ9HCS5 686 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-203ENST00000527916 C11orf16Q9NQ32 467 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 HOMER2Q9NSB8 354 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 SYNPO2Q9UMS6 1093 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 Q9Y3F1 56 aa12.48□□□□□ -0.41
CPSF1-203ENST00000527916 MYH4Q9Y623 1939 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 PRR33A8MZF0 331 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 PSMC6P62333 389 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 CNTN2Q02246 1040 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 TAP1Q03518 808 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms