RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RAG1P15918 1043 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 CREB3L3Q68CJ9 461 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 IQCA1Q86XH1 822 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 NCOA7Q8NI08 942 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 RNPC3Q96LT9 517 aaKnown RBP11.88□□□□□ -0.51
VPS28-204ENST00000526054 ACAD9Q9H845 621 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 TCP11L1Q9NUJ3 509 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.88□□□□□ -0.51
VPS28-204ENST00000526054 STX8Q9UNK0 236 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 MYADML2A6NDP7 307 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 DCDC2CA8MYV0 355 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 TMEM232C9JQI7 657 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 E7EWF7 191 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 SLC27A2O14975 620 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 KIAA0355O15063 1070 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 EPB41L2O43491 1005 aaKnown RBP11.87□□□□□ -0.51
VPS28-204ENST00000526054 DUSP11O75319 330 aaKnown RBP11.87□□□□□ -0.51
VPS28-204ENST00000526054 C6orf222P0C671 652 aaPredicted RBP11.87□□□□□ -0.51
VPS28-204ENST00000526054 FDX1P10109 184 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 ITGB8P26012 769 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 CST5P28325 142 aaPredicted RBP11.87□□□□□ -0.51
VPS28-204ENST00000526054 SLC1A4P43007 532 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 SMAD3P84022 425 aaKnown RBP11.87□□□□□ -0.51
VPS28-204ENST00000526054 FPGSQ05932 587 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 ACVR2BQ13705 512 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 NECTIN1Q15223 517 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 ARMCX2Q7L311 632 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 ANKRD33Q7Z3H0 272 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 FAM160B2Q86V87 743 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 KLHDC9Q8NEP7 349 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 GMCL1Q96IK5 515 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 FGD4Q96M96 766 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 GLT1D1Q96MS3 346 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 UBAC1Q9BSL1 405 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 ABHD16BQ9H3Z7 469 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 SPC25Q9HBM1 224 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 IL17RBQ9NRM6 502 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 RNF146Q9NTX7 359 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 TMEM39AQ9NV64 488 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 VCANP13611 3396 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 CDH23Q9H251 3354 aa11.87□□□□□ -0.51
VPS28-204ENST00000526054 MROH7Q68CQ1 1323 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 ADCY6O43306 1168 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 NMT2O60551 498 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 FAAP100Q0VG06 881 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 KCNA10Q16322 511 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 CCDC144BQ3MJ40 725 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 CCSAPQ6IQ19 270 aaPredicted RBP11.86□□□□□ -0.51
VPS28-204ENST00000526054 CCDC144CPQ8IYA2 1237 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 PCSK9Q8NBP7 692 aaKnown RBP11.86□□□□□ -0.51
VPS28-204ENST00000526054 CHURC1Q8WUH1 139 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 CHMP4CQ96CF2 233 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 TTC14Q96N46 770 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 TOX2Q96NM4 488 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 LCTP09848 1927 aa11.86□□□□□ -0.51
VPS28-204ENST00000526054 ASGR1P07306 291 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 TOP1P11387 765 aaKnown RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 MCCP23508 829 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 NOVP48745 357 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 EPHB4P54760 987 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 CNTN2Q02246 1040 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 KRT32Q14532 448 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 SART3Q15020 963 aaKnown RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 STOX1Q6ZVD7 989 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 KCTD1Q719H9 257 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 DGKHQ86XP1 1220 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS28-204ENST00000526054 AGBL1Q96MI9 1066 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 ZSCAN10Q96SZ4 725 aaPredicted RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 CDX2Q99626 313 aaPredicted RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 ZKSCAN3Q9BRR0 538 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 UPF3AQ9H1J1 476 aaKnown RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 A1CFQ9NQ94 594 aaKnown RBP11.85□□□□□ -0.51
VPS28-204ENST00000526054 ZSWIM5Q9P217 1185 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 ZNF536O15090 1300 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 ELP1O95163 1332 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 TNKSO95271 1327 aa11.85□□□□□ -0.51
VPS28-204ENST00000526054 A0A0U1RQG5 324 aaPredicted RBP11.84□□□□□ -0.51
VPS28-204ENST00000526054 ERICH2A1L162 156 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 ALAS1P13196 640 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 HSPA4P34932 840 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 GJA9P57773 515 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 IRX5P78411 483 aaPredicted RBP11.84□□□□□ -0.51
VPS28-204ENST00000526054 CCDC96Q2M329 555 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 TKFCQ3LXA3 575 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 GNASQ5JWF2 1037 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 CCDC174Q6PII3 467 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 RASGRP2Q7LDG7 609 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 MB21D2Q8IYB1 491 aaPredicted RBP11.84□□□□□ -0.51
VPS28-204ENST00000526054 FAM133AQ8N9E0 248 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 VTI1AQ96AJ9 217 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 TMEM47Q9BQJ4 181 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 KATNBL1Q9H079 304 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 TBX21Q9UL17 535 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 MTMR7Q9Y216 660 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 TAF6LQ9Y6J9 622 aa11.84□□□□□ -0.51
VPS28-204ENST00000526054 TMEM265A0A087WTH1 108 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 ASB14A6NK59 587 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 PLA2G6O60733 806 aa11.83□□□□□ -0.52
VPS28-204ENST00000526054 TIMP1P01033 207 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms