RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 SPATC1Q76KD6 591 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 LRP10Q7Z4F1 713 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 NLRX1Q86UT6 975 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 NAT16Q8N8M0 369 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 JMJD8Q96S16 334 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 PLCD4Q9BRC7 762 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 SNTG2Q9NY99 539 aa8.41□□□□□ -1.06
CPNE3-207ENST00000523588 AGRPO00253 132 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 GLI1P08151 1106 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 HOXC12P31275 282 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 KIR3DS1Q14943 382 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 SNX17Q15036 470 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 SLC14A2Q15849 920 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 TMEM67Q5HYA8 995 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 HLA-DQA1Q5Y7H0 255 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 ASIC4Q96FT7 647 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 DEPDC7Q96QD5 511 aa8.4□□□□□ -1.06
CPNE3-207ENST00000523588 IQCA1LA6NCM1 817 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 WTIPA6NIX2 430 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-207ENST00000523588 TBC1D8O95759 1140 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 SCG5P05408 212 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 THBDP07204 575 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 GALK1P51570 392 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 KREMEN2Q8NCW0 462 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 NPLOC4Q8TAT6 608 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 OSBPL2Q9H1P3 480 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 GPRC5CQ9NQ84 441 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 ARHGEF4Q9NR80 690 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 GPR160Q9UJ42 338 aa8.39□□□□□ -1.07
CPNE3-207ENST00000523588 GFRA1P56159 465 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 MTERF2Q49AM1 385 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 GALNT18Q6P9A2 607 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 KSR1Q8IVT5 923 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 FRS2Q8WU20 508 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 CCDC140Q96MF4 163 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 LNPKQ9C0E8 428 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 CWC22Q9HCG8 908 aaKnown RBP8.38□□□□□ -1.07
CPNE3-207ENST00000523588 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.38□□□□□ -1.07
CPNE3-207ENST00000523588 ACSL6Q9UKU0 697 aa8.38□□□□□ -1.07
CPNE3-207ENST00000523588 YBX2Q9Y2T7 364 aaKnown RBP8.38□□□□□ -1.07
CPNE3-207ENST00000523588 ARNTLO00327 626 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 ADCY3O60266 1144 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 DIAPH1O60610 1272 aaKnown RBP8.37□□□□□ -1.07
CPNE3-207ENST00000523588 SNRPB2P08579 225 aaKnown RBP8.37□□□□□ -1.07
CPNE3-207ENST00000523588 PLS3P13797 630 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 HSP90AA2PQ14568 343 aaPredicted RBP8.37□□□□□ -1.07
CPNE3-207ENST00000523588 LIN37Q96GY3 246 aaPredicted RBP8.37□□□□□ -1.07
CPNE3-207ENST00000523588 C1orf159Q96HA4 380 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 SRPK1Q96SB4 655 aaKnown RBP8.37□□□□□ -1.07
CPNE3-207ENST00000523588 SPATA9Q9BWV2 254 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 CLEC1BQ9P126 229 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 IMPACTQ9P2X3 320 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 PFDN2Q9UHV9 154 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 TAF6LQ9Y6J9 622 aa8.37□□□□□ -1.07
CPNE3-207ENST00000523588 PAMP19021 973 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 ECI1P42126 302 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 PRSS53Q2L4Q9 553 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 DENND5AQ6IQ26 1287 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 CPNE8Q86YQ8 564 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 LRRC47Q8N1G4 583 aaKnown RBP8.36□□□□□ -1.07
CPNE3-207ENST00000523588 TMEM145Q8NBT3 493 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 MMP19Q99542 508 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 CRTAC1Q9NQ79 661 aa8.36□□□□□ -1.07
CPNE3-207ENST00000523588 NPHP3-ACAD11A0A0J9YXS1 232 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 CPP00450 1065 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 MSL3P1P0C860 447 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 PNLIPP16233 465 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 PRKCAP17252 672 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 L1CAMP32004 1257 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 MVKQ03426 396 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 SSRP1Q08945 709 aaKnown RBP8.35□□□□□ -1.07
CPNE3-207ENST00000523588 CCDC144BQ3MJ40 725 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 SLC35F1Q5T1Q4 408 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 MBLAC2Q68D91 279 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 JAMLQ86YT9 394 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 SIRT2Q8IXJ6 389 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 NLGN2Q8NFZ4 835 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 DNAJC7Q99615 494 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 AARSD1Q9BTE6 412 aaKnown RBP8.35□□□□□ -1.07
CPNE3-207ENST00000523588 IER2Q9BTL4 223 aa8.35□□□□□ -1.07
CPNE3-207ENST00000523588 TMEFF2Q9UIK5 374 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-207ENST00000523588 CDK11AQ9UQ88 783 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-207ENST00000523588 TRBV23OR9-2A0A075B6M9 112 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 DLX3O60479 287 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 FGFR1P11362 822 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 KCNJ6P48051 423 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 LAPTM5Q13571 262 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 YOD1Q5VVQ6 348 aaPredicted RBP8.34□□□□□ -1.07
CPNE3-207ENST00000523588 CCDC103Q8IW40 242 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 OSBP2Q969R2 916 aa8.34□□□□□ -1.07
CPNE3-207ENST00000523588 INTS4Q96HW7 963 aaKnown RBP8.34□□□□□ -1.07
CPNE3-207ENST00000523588 C7orf72A4D263 438 aa8.33□□□□□ -1.08
CPNE3-207ENST00000523588 PPP1R11O60927 126 aaPredicted RBP8.33□□□□□ -1.08
CPNE3-207ENST00000523588 MAP4K2Q12851 820 aa8.33□□□□□ -1.08
CPNE3-207ENST00000523588 IFRD2Q12894 506 aaPredicted RBP8.33□□□□□ -1.08
CPNE3-207ENST00000523588 BMS1Q14692 1282 aaKnown RBP8.33□□□□□ -1.08
CPNE3-207ENST00000523588 TESK1Q15569 626 aa8.33□□□□□ -1.08
CPNE3-207ENST00000523588 INF2Q27J81 1249 aa8.33□□□□□ -1.08
CPNE3-207ENST00000523588 NUP43Q8NFH3 380 aa8.33□□□□□ -1.08
CPNE3-207ENST00000523588 SLC6A17Q9H1V8 727 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms