RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	MTMR8	Q96EF0	704 aa		13.81	□□□□□ -0.2
PVT1-215	ENST00000522963	LLPH	Q9BRT6	129 aa	Known RBP	13.81	□□□□□ -0.2
PVT1-215	ENST00000522963	SLC26A6	Q9BXS9	759 aa		13.81	□□□□□ -0.2
PVT1-215	ENST00000522963	RAVER2	Q9HCJ3	691 aa	Known RBP	13.81	□□□□□ -0.2
PVT1-215	ENST00000522963	FOXD4L1	Q9NU39	408 aa		13.81	□□□□□ -0.2
PVT1-215	ENST00000522963	PLXNB2	O15031	1838 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	hCG_1642624	A0A1W2PR95	340 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	CDKL5	O76039	1030 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	SSRP1	Q08945	709 aa	Known RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	SNRNP48	Q6IEG0	339 aa	Known RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	CCDC174	Q6PII3	467 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	SLAIN1	Q8ND83	568 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	DDX11	Q96FC9	970 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	INTS4	Q96HW7	963 aa	Known RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	PIGS	Q96S52	555 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	RNF26	Q9BY78	433 aa	Predicted RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	GJD2	Q9UKL4	321 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	ADAMTS5	Q9UNA0	930 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963		V9GY48	417 aa	Predicted RBP	13.8	□□□□□ -0.2
PVT1-215	ENST00000522963		A0A0G2JMZ2	1700 aa		13.8	□□□□□ -0.2
PVT1-215	ENST00000522963	PRPF3	O43395	683 aa	Known RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	FDPS	P14324	419 aa	Known RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	PTPRE	P23469	700 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	RGS2	P41220	211 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	UBXN2A	P68543	259 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	CDC37	Q16543	378 aa	Predicted RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	HOMER1	Q86YM7	354 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	SPRYD3	Q8NCJ5	442 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	SOCS4	Q8WXH5	440 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	ARMC5	Q96C12	935 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	RRP36	Q96EU6	259 aa	Known RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	RANBP17	Q9H2T7	1088 aa	Known RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	HOMER2	Q9NSB8	354 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	ORC3	Q9UBD5	711 aa	Predicted RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	STK36	Q9NRP7	1315 aa		13.79	□□□□□ -0.2
PVT1-215	ENST00000522963	SLC15A5	A6NIM6	579 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	ZBTB5	O15062	677 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	SLC25A27	O95847	323 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	INHA	P05111	366 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	HMGN5	P82970	282 aa	Known RBP	13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	AKAP17A	Q02040	695 aa	Known RBP	13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	MAP2K5	Q13163	448 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	IRF5	Q13568	498 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	MTFR1	Q15390	333 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	PKN1	Q16512	942 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	QRICH1	Q2TAL8	776 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	MORN1	Q5T089	497 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	DPP9	Q86TI2	863 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	RIOX2	Q8IUF8	465 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	TRIM22	Q8IYM9	498 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	SHCBP1	Q8NEM2	672 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	REPS2	Q8NFH8	660 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	ZNF333	Q96JL9	665 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	MMP19	Q99542	508 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	TMEM106C	Q9BVX2	250 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	TEX13B	Q9BXU2	312 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	MROH8	Q9H579	483 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	SLC38A10	Q9HBR0	1119 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	ZNF214	Q9UL59	606 aa	Predicted RBP	13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	SMC3	Q9UQE7	1217 aa		13.78	□□□□□ -0.2
PVT1-215	ENST00000522963	PNMA6F	A0A0J9YX94	578 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	ZNF536	O15090	1300 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	PPP1R11	O60927	126 aa	Predicted RBP	13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	DEXI	O95424	95 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	HSP90AA1	P07900	732 aa	Known RBP	13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	FDX1	P10109	184 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	FCER1A	P12319	257 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	TAL1	P17542	331 aa	Predicted RBP	13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	GJB2	P29033	226 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	ADORA2A	P29274	412 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	TRIM32	Q13049	653 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	CCL14	Q16627	93 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	PXYLP1	Q8TE99	480 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	AGBL1	Q96MI9	1066 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	AIFM3	Q96NN9	605 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	APBA2	Q99767	749 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	SEC63	Q9UGP8	760 aa	Known RBP	13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	RIPK3	Q9Y572	518 aa		13.77	□□□□□ -0.21
PVT1-215	ENST00000522963	SMCHD1	A6NHR9	2005 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	ALAS1	P13196	640 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	CCL5	P13501	91 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	SCG2	P13521	617 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	COPB2	P35606	906 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	GRB14	Q14449	540 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	KCTD2	Q14681	263 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	PFKFB3	Q16875	520 aa	Predicted RBP	13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	NPLOC4	Q8TAT6	608 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	TRIB2	Q92519	343 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	ALG1	Q9BT22	464 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	RNF208	Q9H0X6	261 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	UNC93B1	Q9H1C4	597 aa		13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	RBM27	Q9P2N5	1060 aa	Known RBP	13.76	□□□□□ -0.21
PVT1-215	ENST00000522963	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	MYH6	P13533	1939 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	POTEF	A5A3E0	1075 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	STRN	O43815	780 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	HMGCR	P04035	888 aa		13.75	□□□□□ -0.21
PVT1-215	ENST00000522963	ICAM1	P05362	532 aa		13.75	□□□□□ -0.21

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