RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 TMTC1Q8IUR5 882 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 LUC7LQ9NQ29 371 aaKnown RBP11.35□□□□□ -0.59
MCF2-209ENST00000520602 MTMR4Q9NYA4 1195 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 PI4KBQ9UBF8 816 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 B4DLN1 442 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 LAD1O00515 517 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 TM4SF1P30408 202 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 DDR1Q08345 913 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 RCSD1Q6JBY9 416 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 POTEDQ86YR6 584 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 CCDC65Q8IXS2 484 aa11.35□□□□□ -0.59
MCF2-209ENST00000520602 MACROD2A1Z1Q3 448 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 TDP2O95551 362 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 MATR3P43243 847 aaKnown RBP eCLIP11.34□□□□□ -0.59
MCF2-209ENST00000520602 SEPT2Q15019 361 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 AOC3Q16853 763 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 E4F1Q66K89 784 aaPredicted RBP11.34□□□□□ -0.59
MCF2-209ENST00000520602 CPXCR1Q8N123 301 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 JDP2Q8WYK2 163 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 CAPZA3Q96KX2 299 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 KANSL2Q9H9L4 492 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 ARHGEF10LQ9HCE6 1279 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 FAM205AQ6ZU69 1335 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 STXBP3O00186 592 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 ERLIN1O75477 346 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 CYP4A11Q02928 519 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 PPP2R3AQ06190 1150 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 PLS1Q14651 629 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 LARP4BQ92615 738 aaKnown RBP11.34□□□□□ -0.59
MCF2-209ENST00000520602 TUBGCP2Q9BSJ2 902 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 RWDD2AQ9UIY3 292 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 ZBTB21Q9ULJ3 1066 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 KIAA1024Q9UPX6 916 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 PODNQ7Z5L7 613 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 FBXO11Q86XK2 927 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 OR8K1Q8NGG5 319 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 AK8Q96MA6 479 aa11.34□□□□□ -0.59
MCF2-209ENST00000520602 A0A087X0B3 334 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 PNMA6FA0A0J9YX94 578 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 WNT7AO00755 349 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 ECE2O60344 883 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 RHOXF2BP0C7M4 288 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 RXRBP28702 533 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 KIF5AQ12840 1032 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 DPYDQ12882 1025 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 TNIP1Q15025 636 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 CDC42EP5Q6NZY7 148 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 COL23A1Q86Y22 540 aaPredicted RBP11.33□□□□□ -0.6
MCF2-209ENST00000520602 ADGRF4Q8IZF3 695 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 NEK11Q8NG66 645 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 HPS3Q969F9 1004 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 SPAG5Q96R06 1193 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 RHOXF2Q9BQY4 288 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 COL14A1Q05707 1796 aaKnown RBP11.33□□□□□ -0.6
MCF2-209ENST00000520602 EEF2P13639 858 aaKnown RBP11.33□□□□□ -0.6
MCF2-209ENST00000520602 UBXN2AP68543 259 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 NFIAQ12857 509 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 SYCP1Q15431 976 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 TOGARAM2Q6ZUX3 1019 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 SYCP3Q8IZU3 236 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 SPZ1Q9BXG8 430 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 PKD1L3Q7Z443 1732 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 ROBO1Q9Y6N7 1651 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 PPP1R12BO60237 982 aaPredicted RBP11.33□□□□□ -0.6
MCF2-209ENST00000520602 GH2P01242 217 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 PDHBP11177 359 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 KRT83P78385 493 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 TRIM14Q14142 442 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 MIGA2Q7L4E1 593 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
MCF2-209ENST00000520602 CTAGE15A4D2H0 777 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 DDX39AO00148 427 aaKnown RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 KRT86O43790 486 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CTAGE8P0CG41 777 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 SLURP2P0DP57 97 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CD44P16070 742 aaKnown RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 FAM193AP78312 1265 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 MTF1Q14872 753 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CTAGE6Q86UF2 777 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CTAGE4Q8IX94 777 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 ACRBPQ8NEB7 543 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 GJA10Q969M2 543 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 CNOT6LQ96LI5 555 aaKnown RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 AMNQ9BXJ7 453 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 GLT8D2Q9H1C3 349 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 EHMT1Q9H9B1 1298 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 NLRC4Q9NPP4 1024 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 HOMER2Q9NSB8 354 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 PALM3A6NDB9 673 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 HOXA13P31271 388 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 BMS1Q14692 1282 aaKnown RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 TCP11X2Q5H9J9 407 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 DCAF17Q5H9S7 520 aaPredicted RBP11.32□□□□□ -0.6
MCF2-209ENST00000520602 TYW1BQ6NUM6 668 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 MAEAQ7L5Y9 396 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 P2RX5Q93086 422 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CEP89Q96ST8 783 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 CRACR2AQ9BSW2 395 aa11.32□□□□□ -0.6
MCF2-209ENST00000520602 DHX36Q9H2U1 1008 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms