RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GYS2P54840 703 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 ICA1Q05084 483 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 ZSCAN26Q16670 478 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CAMSAP1Q5T5Y3 1602 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 TOGARAM2Q6ZUX3 1019 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 KSR1Q8IVT5 923 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 IRX2Q9BZI1 471 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 LMTK2Q8IWU2 1503 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CLRN2A0PK11 232 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 TRIM37O94972 964 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 SERPINB2P05120 415 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 KRT31Q15323 416 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 LARP4BQ92615 738 aaKnown RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 XDHP47989 1333 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CTDNEP1O95476 244 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 FDPSP14324 419 aaKnown RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 ATP2B4P23634 1241 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 RFX5P48382 616 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CEP57Q86XR8 500 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 UHMK1Q8TAS1 419 aaKnown RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 SH3RF3Q8TEJ3 882 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 FNBP1Q96RU3 617 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 NT5C3AQ9H0P0 336 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CALUO43852 315 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CALCOCO2Q13137 446 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 PALLDQ8WX93 1383 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 PRPHP41219 470 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 VWA3BQ502W6 1294 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 DHX40Q8IX18 779 aaKnown RBP12.92□□□□□ -0.34
SYNPO-204ENST00000519664 IFT20Q8IY31 132 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 CCDC127Q96BQ5 260 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 PARD6BQ9BYG5 372 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 BSDC1Q9NW68 430 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-204ENST00000519664 SERPINB13Q9UIV8 391 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 FLOT1O75955 427 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 DLGAP5Q15398 846 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 LONRF2Q1L5Z9 754 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 SRGAP1Q7Z6B7 1085 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 STAG1Q8WVM7 1258 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 NCAPD2Q15021 1401 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 ADAMTS13Q76LX8 1427 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 TUBB2AQ13885 445 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 KCTD16Q68DU8 428 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 SARM1Q6SZW1 724 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 TMTC3Q6ZXV5 915 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 TRIM58Q8NG06 486 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 CCDC26Q8TAB7 109 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 P2RX5Q93086 422 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 TUBB2BQ9BVA1 445 aa12.92□□□□□ -0.34
SYNPO-204ENST00000519664 USP42Q9H9J4 1324 aaKnown RBP12.92□□□□□ -0.34
SYNPO-204ENST00000519664 IQCB1Q15051 598 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 KMT5BQ4FZB7 885 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 GBP6Q6ZN66 633 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 NAP1L4Q99733 375 aaKnown RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 DCP1AQ9NPI6 582 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 USTQ9Y2C2 406 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 IKBKGQ9Y6K9 419 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 KIF4AO95239 1232 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ALAS1P13196 640 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 EZRP15311 586 aaKnown RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 TRAPPC10P48553 1259 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ANTXR2P58335 489 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 MTF1Q14872 753 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 BRD3Q15059 726 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 WHAMMP3Q1A5X7 153 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ZNF658Q5TYW1 1059 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 CLIC2O15247 247 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 VPS41P49754 854 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 FBXO11Q86XK2 927 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ARFGAP2Q8N6H7 521 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 RABGGTAQ92696 567 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 IQGAP1P46940 1657 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 VIMP08670 466 aaKnown RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 BRD2P25440 801 aaKnown RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 STAT1P42224 750 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 CDK8P49336 464 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 TBC1D9BQ66K14 1250 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ARMCX5Q6P1M9 558 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 ZCCHC17Q9NP64 241 aaKnown RBP12.91□□□□□ -0.34
SYNPO-204ENST00000519664 KIDINS220Q9ULH0 1771 aa12.91□□□□□ -0.34
SYNPO-204ENST00000519664 PCP11498 1178 aaKnown RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 IRX5P78411 483 aaPredicted RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 TERF2Q15554 542 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 CCDC121Q6ZUS5 278 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 DPH5Q9H2P9 285 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 MTRF1LQ9UGC7 380 aaKnown RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 MTUS1Q9ULD2 1270 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 LEMD3Q9Y2U8 911 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 TESPA1A2RU30 521 aaPredicted RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 NR2F2P24468 414 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 GLT8D2Q9H1C3 349 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 POTEMA6NI47 508 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 MAP2K2P36507 400 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 SMTNP53814 917 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 ZRSR2Q15696 482 aaKnown RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 METTL16Q86W50 562 aaKnown RBP12.9□□□□□ -0.34
SYNPO-204ENST00000519664 FAM178BQ8IXR5 827 aa12.9□□□□□ -0.34
SYNPO-204ENST00000519664 SERPINA10Q9UK55 444 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms