RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 HMMRO75330 724 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 CABYRO75952 493 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 SMPD1P17405 629 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 OAZ1P54368 228 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 VWCEQ96DN2 955 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 AGBL1Q96MI9 1066 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 CERS4Q9HA82 394 aa24.27■■□□□ 1.48
SQSTM1-215ENST00000514093 MYH7P12883 1935 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 SLFN13Q68D06 897 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 EEPD1Q7L9B9 569 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 RPUSD2Q8IZ73 545 aaKnown RBP24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 ZNF444Q8N0Y2 327 aaPredicted RBP24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 MKL1Q969V6 931 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 ACAD9Q9H845 621 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 A1CFQ9NQ94 594 aaKnown RBP24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 MTMR4Q9NYA4 1195 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 PCDHA11Q9Y5I1 949 aa24.26■■□□□ 1.47
SQSTM1-215ENST00000514093 MYH4Q9Y623 1939 aa24.25■■□□□ 1.47
SQSTM1-215ENST00000514093 TMEM232C9JQI7 657 aa24.25■■□□□ 1.47
SQSTM1-215ENST00000514093 BMP3P12645 472 aa24.25■■□□□ 1.47
SQSTM1-215ENST00000514093 RNF146Q9NTX7 359 aa24.25■■□□□ 1.47
SQSTM1-215ENST00000514093 COG6Q9Y2V7 657 aa24.25■■□□□ 1.47
SQSTM1-215ENST00000514093 ASB14A6NK59 587 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 ZEB2O60315 1214 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 ATP2A2P16615 1042 aaKnown RBP24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 TTLL4Q14679 1199 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 FBXO16Q8IX29 292 aaPredicted RBP24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 GMCL1P1Q8NEA9 526 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 C1QTNF1Q9BXJ1 281 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 ZNF536O15090 1300 aa24.24■■□□□ 1.47
SQSTM1-215ENST00000514093 TTLL1O95922 423 aa24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 SNAP25P60880 206 aa24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 DEFB128Q7Z7B8 93 aa24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 OSBP2Q969R2 916 aa24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 TRERF1Q96PN7 1200 aa24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 EPB41L4AQ9HCS5 686 aaPredicted RBP24.23■■□□□ 1.47
SQSTM1-215ENST00000514093 SMARCA5O60264 1052 aaPredicted RBP24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 CA3P07451 260 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 CYP2C9P11712 490 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 ALAS1P13196 640 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 HNRNPUQ00839 825 aaKnown RBP eCLIP24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 AAK1Q2M2I8 961 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 KRT40Q6A162 431 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 TAPT1Q6NXT6 567 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 GIMAP6Q6P9H5 292 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 PURBQ96QR8 312 aaKnown RBP24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 EPHX3Q9H6B9 360 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 TRMT13Q9NUP7 481 aaKnown RBP24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 MTCH2Q9Y6C9 303 aa24.22■■□□□ 1.47
SQSTM1-215ENST00000514093 ERC2O15083 957 aa24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 APPP05067 770 aa24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 TDO2P48775 406 aa24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 IKQ13123 557 aaPredicted RBP24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 TMEM67Q5HYA8 995 aa24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 ALDH8A1Q9H2A2 487 aaPredicted RBP24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 ZBTB40Q9NUA8 1239 aa24.21■■□□□ 1.47
SQSTM1-215ENST00000514093 EPOPA6NHQ4 379 aa24.2■■□□□ 1.46
SQSTM1-215ENST00000514093 STAT2P52630 851 aa24.2■■□□□ 1.46
SQSTM1-215ENST00000514093 MUM1L1Q5H9M0 696 aa24.2■■□□□ 1.46
SQSTM1-215ENST00000514093 IQSEC1Q6DN90 963 aa24.2■■□□□ 1.46
SQSTM1-215ENST00000514093 KIAA1211Q6ZU35 1233 aa24.2■■□□□ 1.46
SQSTM1-215ENST00000514093 FDX1P10109 184 aa24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 MCCP23508 829 aa24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 PPP1R13LQ8WUF5 828 aa24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 STAG1Q8WVM7 1258 aa24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 SEZ6LQ9BYH1 1024 aa24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 PRRC2BQ5JSZ5 2229 aaKnown RBP24.19■■□□□ 1.46
SQSTM1-215ENST00000514093 M0R2C6 588 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 GPAA1O43292 621 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 GTPBP6O43824 516 aaPredicted RBP24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 TSPY3P0CV98 308 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 TSPY8P0CW00 308 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 NEDD1Q8NHV4 660 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 CHURC1Q8WUH1 139 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 APPBP2Q92624 585 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 LRFN3Q9BTN0 628 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 ZNF287Q9HBT7 754 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 CYP39A1Q9NYL5 469 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 SYNPO2Q9UMS6 1093 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 Q9Y3F1 56 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 LRRC37A2A6NM11 1700 aa24.18■■□□□ 1.46
SQSTM1-215ENST00000514093 ARHGEF15O94989 841 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 HOXD11P31277 338 aaPredicted RBP24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 SLC1A4P43007 532 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 TFAP4Q01664 338 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 TKFCQ3LXA3 575 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 KCTD1Q719H9 257 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 FAM160B2Q86V87 743 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 KBTBD3Q8NAB2 608 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 ARNTL2Q8WYA1 636 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 LRRCC1Q9C099 1032 aa24.17■■□□□ 1.46
SQSTM1-215ENST00000514093 TNKSO95271 1327 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 RNF113AO15541 343 aaKnown RBP24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 MYL3P08590 195 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 NSMFQ6X4W1 530 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 RASGRP2Q7LDG7 609 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 ECHDC1Q9NTX5 307 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 DDX19BQ9UMR2 479 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 TRANK1O15050 2925 aa24.16■■□□□ 1.46
SQSTM1-215ENST00000514093 SCN5AQ14524 2016 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms