RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TAP1Q03518 808 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 UBE3CQ15386 1083 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 CLASRPQ8N2M8 674 aaKnown RBP13.11□□□□□ -0.31
DDX41-216ENST00000513562 PHOSPHO2Q8TCD6 241 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 SLC9A7Q96T83 725 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 ACAD9Q9H845 621 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 A1CFQ9NQ94 594 aaKnown RBP13.11□□□□□ -0.31
DDX41-216ENST00000513562 HOMER2Q9NSB8 354 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 FEM1BQ9UK73 627 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 SYNPO2Q9UMS6 1093 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 Q9Y3F1 56 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 GREB1LQ9C091 1923 aaPredicted RBP13.1□□□□□ -0.31
DDX41-216ENST00000513562 FAM86C2PA6NEL3 165 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 PI4K2BG5E9Z4 385 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 IFIT2P09913 472 aaKnown RBP13.1□□□□□ -0.31
DDX41-216ENST00000513562 SUPT20HL2P0C7V6 817 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 SBK1Q52WX2 424 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 GMCL1P1Q8NEA9 526 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 ARNTL2Q8WYA1 636 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 KIF1BPQ96EK5 621 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 TRMT13Q9NUP7 481 aaKnown RBP13.1□□□□□ -0.31
DDX41-216ENST00000513562 CLIP2Q9UDT6 1046 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 LRRC37A2A6NM11 1700 aa13.1□□□□□ -0.31
DDX41-216ENST00000513562 LPXNO60711 386 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 FDX1P10109 184 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 CYP2C9P11712 490 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 ACTN1P12814 892 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 RFC2P35250 354 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 GRB10Q13322 594 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 TMEM63BQ5T3F8 832 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 IQSEC1Q6DN90 963 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 TAPT1Q6NXT6 567 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 DEFB128Q7Z7B8 93 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 RPAP2Q8IXW5 612 aaPredicted RBP13.09□□□□□ -0.31
DDX41-216ENST00000513562 GBF1Q92538 1859 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 MKL1Q969V6 931 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 PUS7LQ9H0K6 701 aaKnown RBP13.09□□□□□ -0.31
DDX41-216ENST00000513562 BOLA2Q9H3K6 86 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 MKNK2Q9HBH9 465 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 PDGFCQ9NRA1 345 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 RNF146Q9NTX7 359 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 DDX49Q9Y6V7 483 aaKnown RBP13.09□□□□□ -0.31
DDX41-216ENST00000513562 ZNF536O15090 1300 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 TNKSO95271 1327 aa13.09□□□□□ -0.31
DDX41-216ENST00000513562 ATP5JP18859 108 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 ALYREFQ86V81 257 aaKnown RBP13.08□□□□□ -0.32
DDX41-216ENST00000513562 HERC6Q8IVU3 1022 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 FBXO16Q8IX29 292 aaPredicted RBP13.08□□□□□ -0.32
DDX41-216ENST00000513562 CEP95Q96GE4 821 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 HAUS7Q99871 368 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 CD320Q9NPF0 282 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 MTMR4Q9NYA4 1195 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 COG6Q9Y2V7 657 aa13.08□□□□□ -0.32
DDX41-216ENST00000513562 MYH8P13535 1937 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 PIEZO1Q92508 2521 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 TCF20Q9UGU0 1960 aaKnown RBP13.07□□□□□ -0.32
DDX41-216ENST00000513562 PRR33A8MZF0 331 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 BMP3P12645 472 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 TKFCQ3LXA3 575 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 GIMAP6Q6P9H5 292 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 LRRC47Q8N1G4 583 aaKnown RBP13.07□□□□□ -0.32
DDX41-216ENST00000513562 MORC4Q8TE76 937 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 VTA1Q9NP79 307 aa13.07□□□□□ -0.32
DDX41-216ENST00000513562 KIF28PB7ZC32 967 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 BAIAP3O94812 1187 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 TTLL1O95922 423 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 IQCF3P0C7M6 154 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 STAT2P52630 851 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 PURAQ00577 322 aaKnown RBP13.06□□□□□ -0.32
DDX41-216ENST00000513562 DUSP28Q4G0W2 176 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 SLFN13Q68D06 897 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 ZSCAN25Q6NSZ9 544 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 EEPD1Q7L9B9 569 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 SPRED2Q7Z698 418 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 STK11IPQ8N1F8 1099 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 TRERF1Q96PN7 1200 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 STRBPQ96SI9 672 aaKnown RBP13.06□□□□□ -0.32
DDX41-216ENST00000513562 POLR3EQ9NVU0 708 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 CYP39A1Q9NYL5 469 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 LMCD1Q9NZU5 365 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 PLIN4Q96Q06 1357 aa13.06□□□□□ -0.32
DDX41-216ENST00000513562 BAZ2AQ9UIF9 1905 aaKnown RBP13.05□□□□□ -0.32
DDX41-216ENST00000513562 GSG1L2A8MUP6 293 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 MINDY4BA8MYZ0 360 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 TMEM232C9JQI7 657 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 KIAA1211Q6ZU35 1233 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 FAM160B2Q86V87 743 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 GMCL1Q96IK5 515 aa13.05□□□□□ -0.32
DDX41-216ENST00000513562 PRRC2BQ5JSZ5 2229 aaKnown RBP13.05□□□□□ -0.32
DDX41-216ENST00000513562 PLA2G6O60733 806 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 PRDM1O75626 825 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 ALAS1P13196 640 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 CPT1AP50416 773 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 MUM1L1Q5H9M0 696 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 NFRKBQ6P4R8 1299 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 ZNF444Q8N0Y2 327 aaPredicted RBP13.04□□□□□ -0.32
DDX41-216ENST00000513562 CHURC1Q8WUH1 139 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 STAG1Q8WVM7 1258 aa13.04□□□□□ -0.32
DDX41-216ENST00000513562 MTG1Q9BT17 334 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms