RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PUF60Q9UHX1 559 aaKnown RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 PRPF6O94906 941 aaKnown RBP10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 MCM7P33993 719 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 SLF1Q9BQI6 1058 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 ZCCHC17Q9NP64 241 aaKnown RBP10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 SAR1BQ9Y6B6 198 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 ADAMTS3O15072 1205 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 SLC26A4O43511 780 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 KRT86O43790 486 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 ABL1P00519 1130 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 PMS1P54277 932 aaKnown RBP10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 RAD51AP2Q09MP3 1159 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 SLC35G1Q2M3R5 365 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 KRT25Q7Z3Z0 450 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 NOA1Q8NC60 698 aaKnown RBP10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 P2RX5Q93086 422 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 KAT14Q9H8E8 782 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 TAF1P21675 1872 aa10.34□□□□□ -0.75
PDGFRA-208ENST00000509490 ERICH4A6NGS2 130 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 PJA2O43164 708 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 CDC25AP30304 524 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 ERFEQ4G0M1 354 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 MIIPQ5JXC2 388 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 RC3H1Q5TC82 1133 aaKnown RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 IQCEQ6IPM2 695 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 CCDC155Q8N6L0 562 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 NEK11Q8NG66 645 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 TRIM9Q9C026 710 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 NYXQ9GZU5 481 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 PLIN4Q96Q06 1357 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 PVALEFA0A1B0GWK0 134 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 SHOX2O60902 331 aaPredicted RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 CAPN2P17655 700 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 HIBADHP31937 336 aaKnown RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 VAV2P52735 878 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 CENPPQ6IPU0 288 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 TYW1BQ6NUM6 668 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 C3orf67Q6ZVT6 689 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 CCDC47Q96A33 483 aaKnown RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 MAGEC2Q9UBF1 373 aaPredicted RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 PLAGL2Q9UPG8 496 aa10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 ZNF335Q9H4Z2 1342 aaPredicted RBP10.33□□□□□ -0.76
PDGFRA-208ENST00000509490 hCG_1642624A0A1W2PR95 340 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 VEGFAP15692 232 aaPredicted RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 TSR1Q2NL82 804 aaKnown RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 PNMA1Q8ND90 353 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 LRRC15Q8TF66 581 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 TUBGCP2Q9BSJ2 902 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 TMEM60Q9H2L4 133 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 TMEM51Q9NW97 253 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 STK17AQ9UEE5 414 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 SNED1Q8TER0 1413 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 CCDC194A0A1B0GVG4 234 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 LRRIQ3A6PVS8 624 aaPredicted RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 SYF2O95926 243 aaKnown RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 AMPD3Q01432 767 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 EHHADHQ08426 723 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 COG1Q8WTW3 980 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 TSPY2A6NKD2 308 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 CYTH3O43739 400 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 NMT2O60551 498 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 OR52Z1P0C646 297 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 UBA7P41226 1012 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 RPS8P62241 208 aaKnown RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 MARCH10Q8NA82 808 aaPredicted RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 JAKMIP2Q96AA8 810 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 FEZ2Q9UHY8 353 aaPredicted RBP10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 HPCAL4Q9UM19 191 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 SIK3Q9Y2K2 1263 aa10.32□□□□□ -0.76
PDGFRA-208ENST00000509490 ATP8B3O60423 1300 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 RBAK-RBAKDNI3L0D1 243 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 ATP1A1P05023 1023 aaKnown RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 FXR2P51116 673 aaKnown RBP eCLIP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 GSTO1P78417 241 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 CCDC122Q5T0U0 273 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 CCNI2Q6ZMN8 369 aaPredicted RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 AMOTL1Q8IY63 956 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 TRIM58Q8NG06 486 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 AENQ8WTP8 325 aaKnown RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 SYN2Q92777 582 aaPredicted RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 STAMQ92783 540 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 CELF1Q92879 486 aaKnown RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 TRIM47Q96LD4 638 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 NHEJ1Q9H9Q4 299 aaPredicted RBP10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 JRKLQ9Y4A0 524 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 SPATA31A5Q5VU36 1347 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 SPATA31A7Q8IWB4 1347 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 TRIM49BA6NDI0 452 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 DDB1Q16531 1140 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 SRLQ86TD4 932 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 CSGALNACT2Q8N6G5 542 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 WDR66Q8TBY9 1149 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 MMS19Q96T76 1030 aa10.31□□□□□ -0.76
PDGFRA-208ENST00000509490 QSER1Q2KHR3 1735 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 CYP2D6P10635 497 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 EPB41P11171 864 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 TM4SF1P30408 202 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 TFAP4Q01664 338 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 PSMD2Q13200 908 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 NNTQ13423 1086 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms