RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 AKNAD1Q5T1N1 836 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 CCSAPQ6IQ19 270 aaPredicted RBP18.12■□□□□ 0.49
TPM3-219ENST00000509409 PLEKHM2Q8IWE5 1019 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 FAM161BQ96MY7 647 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 TOX2Q96NM4 488 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 RNF41Q9H4P4 317 aaPredicted RBP18.12■□□□□ 0.49
TPM3-219ENST00000509409 CYP39A1Q9NYL5 469 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 STXBP5LQ9Y2K9 1186 aa18.12■□□□□ 0.49
TPM3-219ENST00000509409 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.11■□□□□ 0.49
TPM3-219ENST00000509409 ZNF213O14771 459 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 ADCY6O43306 1168 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 ICAM1P05362 532 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 CST5P28325 142 aaPredicted RBP18.11■□□□□ 0.49
TPM3-219ENST00000509409 FAAP100Q0VG06 881 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 FAM109BQ6ICB4 259 aaPredicted RBP18.11■□□□□ 0.49
TPM3-219ENST00000509409 EEPD1Q7L9B9 569 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 ANKRD33Q7Z3H0 272 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 TTC14Q96N46 770 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 AP5M1Q9H0R1 490 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 UPF3AQ9H1J1 476 aaKnown RBP18.11■□□□□ 0.49
TPM3-219ENST00000509409 RANBP17Q9H2T7 1088 aaKnown RBP18.11■□□□□ 0.49
TPM3-219ENST00000509409 DIAPH3Q9NSV4 1193 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 ELP1O95163 1332 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 PLXNA1Q9UIW2 1896 aa18.11■□□□□ 0.49
TPM3-219ENST00000509409 ZMYM6O95789 1325 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 MROH7Q68CQ1 1323 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 A0A0U1RQG5 324 aaPredicted RBP18.1■□□□□ 0.49
TPM3-219ENST00000509409 DYNC1LI2O43237 492 aaPredicted RBP18.1■□□□□ 0.49
TPM3-219ENST00000509409 PCP11498 1178 aaKnown RBP18.1■□□□□ 0.49
TPM3-219ENST00000509409 BEX3Q00994 111 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 FPGSQ05932 587 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 ZNF697Q5TEC3 545 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 CWC27Q6UX04 472 aaKnown RBP18.1■□□□□ 0.49
TPM3-219ENST00000509409 BTNL9Q6UXG8 535 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 ESR2Q92731 530 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 KATNBL1Q9H079 304 aa18.1■□□□□ 0.49
TPM3-219ENST00000509409 PTPDC1A2A3K4 754 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 ARVCFO00192 962 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 ZEB2O60315 1214 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 BAATQ14032 418 aaPredicted RBP18.09■□□□□ 0.49
TPM3-219ENST00000509409 IQSEC1Q6DN90 963 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 TBC1D10CQ8IV04 446 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 RNPC3Q96LT9 517 aaKnown RBP18.09■□□□□ 0.49
TPM3-219ENST00000509409 PURBQ96QR8 312 aaKnown RBP18.09■□□□□ 0.49
TPM3-219ENST00000509409 ZKSCAN3Q9BRR0 538 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 OSBPL3Q9H4L5 887 aa18.09■□□□□ 0.49
TPM3-219ENST00000509409 DDX49Q9Y6V7 483 aaKnown RBP18.09■□□□□ 0.49
TPM3-219ENST00000509409 HIP1O00291 1037 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 TLR3O15455 904 aaKnown RBP18.08■□□□□ 0.48
TPM3-219ENST00000509409 TIMP1P01033 207 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 PDHBP11177 359 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 CDK7P50613 346 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 KIAA1211Q6ZU35 1233 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 TLK2Q86UE8 772 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 FBXO16Q8IX29 292 aaPredicted RBP18.08■□□□□ 0.48
TPM3-219ENST00000509409 PDGFCQ9NRA1 345 aa18.08■□□□□ 0.48
TPM3-219ENST00000509409 ADD3Q9UEY8 706 aaKnown RBP18.08■□□□□ 0.48
TPM3-219ENST00000509409 SMPD1P17405 629 aa18.07■□□□□ 0.48
TPM3-219ENST00000509409 EPHB4P54760 987 aa18.07■□□□□ 0.48
TPM3-219ENST00000509409 CCDC178Q5BJE1 867 aa18.07■□□□□ 0.48
TPM3-219ENST00000509409 PNMA2Q9UL42 364 aa18.07■□□□□ 0.48
TPM3-219ENST00000509409 GNEQ9Y223 722 aaKnown RBP18.07■□□□□ 0.48
TPM3-219ENST00000509409 NFIBO00712 420 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 CABYRO75952 493 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 CALML3P27482 149 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 SMAD3P84022 425 aaKnown RBP18.06■□□□□ 0.48
TPM3-219ENST00000509409 ZNF543Q08ER8 600 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 FSCN1Q16658 493 aaKnown RBP18.06■□□□□ 0.48
TPM3-219ENST00000509409 TAPT1Q6NXT6 567 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 CXCL17Q6UXB2 119 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 IQCA1Q86XH1 822 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 VTA1Q9NP79 307 aa18.06■□□□□ 0.48
TPM3-219ENST00000509409 ASTN1O14525 1302 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 NEDD4P46934 1319 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 CTAGE5O15320 804 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 KDM4AO75164 1064 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 GOLGA8HP0CJ92 632 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 PTGS1P23219 599 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 ALDH5A1P51649 535 aaPredicted RBP18.05■□□□□ 0.48
TPM3-219ENST00000509409 MFSD5Q6N075 450 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 RNF207Q6ZRF8 634 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 DGKHQ86XP1 1220 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 GUCD1Q96NT3 240 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 UBA5Q9GZZ9 404 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 SEMA6BQ9H3T3 888 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 KAT14Q9H8E8 782 aa18.05■□□□□ 0.48
TPM3-219ENST00000509409 DLL1O00548 723 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 NKX3-2P78367 333 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 PPIGQ13427 754 aaKnown RBP eCLIP18.04■□□□□ 0.484e-7■□□□□ 9.5
TPM3-219ENST00000509409 IMMTQ16891 758 aaKnown RBP18.04■□□□□ 0.48
TPM3-219ENST00000509409 GPATCH4Q5T3I0 446 aaKnown RBP18.04■□□□□ 0.48
TPM3-219ENST00000509409 TMEM199Q8N511 208 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 MPHOSPH6Q99547 160 aaKnown RBP18.04■□□□□ 0.48
TPM3-219ENST00000509409 PPP1R12CQ9BZL4 782 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 CTNNA3Q9UI47 895 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 TBX21Q9UL17 535 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 Q9Y3F1 56 aa18.04■□□□□ 0.48
TPM3-219ENST00000509409 SUPT16HQ9Y5B9 1047 aaKnown RBP18.04■□□□□ 0.48
TPM3-219ENST00000509409 COL6A3P12111 3177 aa18.03■□□□□ 0.48
TPM3-219ENST00000509409 SNHG28P0DPA3 235 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms