RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 NCAM1P13591 858 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 CRKP46108 304 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 FOXO4P98177 505 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 RTP2Q5QGT7 225 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 NT5DC1Q5TFE4 455 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 TMEM52Q8NDY8 209 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 SMARCC1Q92922 1105 aaPredicted RBP5.28□□□□□ -1.56
NUP54-208ENST00000508604 RNF38Q9H0F5 515 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 F8W031 263 aaPredicted RBP5.28□□□□□ -1.56
NUP54-208ENST00000508604 INSRRP14616 1297 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 CORO7P57737 925 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 KRTAP10-2P60368 255 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 INTS3Q68E01 1043 aaKnown RBP5.28□□□□□ -1.56
NUP54-208ENST00000508604 LIPIQ6XZB0 460 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 CABP7Q86V35 215 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 SLC9A7Q96T83 725 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 SLC12A9Q9BXP2 914 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 MYRFQ9Y2G1 1151 aa5.28□□□□□ -1.56
NUP54-208ENST00000508604 SF3B6Q9Y3B4 125 aaKnown RBP5.28□□□□□ -1.56
NUP54-208ENST00000508604 PRICKLE3O43900 615 aaPredicted RBP5.27□□□□□ -1.57
NUP54-208ENST00000508604 PUM1Q14671 1186 aaKnown RBP eCLIP5.27□□□□□ -1.57
NUP54-208ENST00000508604 FNIP1Q8TF40 1166 aa5.27□□□□□ -1.57
NUP54-208ENST00000508604 SPATA25Q9BR10 227 aa5.27□□□□□ -1.57
NUP54-208ENST00000508604 FAM86C2PA6NEL3 165 aa5.26□□□□□ -1.57
NUP54-208ENST00000508604 IMPDH2P12268 514 aa5.26□□□□□ -1.57
NUP54-208ENST00000508604 ALG3Q92685 438 aa5.26□□□□□ -1.57
NUP54-208ENST00000508604 NT5C1AQ9BXI3 368 aa5.26□□□□□ -1.57
NUP54-208ENST00000508604 ADAMTS1Q9UHI8 967 aa5.26□□□□□ -1.57
NUP54-208ENST00000508604 H0Y8X5 98 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 FGF10O15520 208 aaPredicted RBP5.25□□□□□ -1.57
NUP54-208ENST00000508604 L1CAMP32004 1257 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 CEBPAP49715 358 aaPredicted RBP5.25□□□□□ -1.57
NUP54-208ENST00000508604 PMS1P54277 932 aaKnown RBP5.25□□□□□ -1.57
NUP54-208ENST00000508604 GJA9P57773 515 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 PRR5P85299 388 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 POU4F1Q01851 419 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 TAGLNQ01995 201 aaKnown RBP5.25□□□□□ -1.57
NUP54-208ENST00000508604 VWA3BQ502W6 1294 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 ANKRD39Q53RE8 183 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 HHIPL2Q6UWX4 724 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 SAPCD2Q86UD0 394 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 FERMT3Q86UX7 667 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 SLITRK4Q8IW52 837 aa5.25□□□□□ -1.57
NUP54-208ENST00000508604 SRRTQ9BXP5 876 aaKnown RBP5.25□□□□□ -1.57
NUP54-208ENST00000508604 SH3D21A4FU49 640 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 TACR1P25103 407 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 RBM10P98175 930 aaKnown RBP5.24□□□□□ -1.57
NUP54-208ENST00000508604 ADGRG2Q8IZP9 1017 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 RNF34Q969K3 372 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 NUDT5Q9UKK9 219 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 C9IYK1 514 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 PLA2G1BP04054 148 aaKnown RBP5.24□□□□□ -1.57
NUP54-208ENST00000508604 ITGA4P13612 1032 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 ATF2P15336 505 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 ZNF326Q5BKZ1 582 aaKnown RBP5.24□□□□□ -1.57
NUP54-208ENST00000508604 TDRD10Q5VZ19 366 aaKnown RBP5.24□□□□□ -1.57
NUP54-208ENST00000508604 KIAA0825Q8IV33 1275 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 NLGN2Q8NFZ4 835 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 BRF1Q92994 677 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 PTCHD1Q96NR3 888 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 GP6Q9HCN6 339 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 HCFC2Q9Y5Z7 792 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 FHOD1Q9Y613 1164 aa5.24□□□□□ -1.57
NUP54-208ENST00000508604 A0A1B0GTL3 188 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 CD3EP07766 207 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 FBLN1P23142 703 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 ZNF445P59923 1031 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 TCEAL1Q15170 157 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 TTLL7Q6ZT98 887 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 CARFQ8N187 725 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 FIBCD1Q8N539 461 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 ZNF526Q8TF50 670 aaPredicted RBP5.23□□□□□ -1.57
NUP54-208ENST00000508604 FERD3LQ96RJ6 166 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 TM9SF2Q99805 663 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 SPON2Q9BUD6 331 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 NTMQ9P121 344 aa5.23□□□□□ -1.57
NUP54-208ENST00000508604 SHOXO15266 292 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 ASGR2P07307 311 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 CD247P20963 164 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 CNR2P34972 360 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 MAGEA10P43363 369 aaPredicted RBP5.22□□□□□ -1.57
NUP54-208ENST00000508604 HTRA3P83110 453 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 DCAF15Q66K64 600 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 B3GNT8Q7Z7M8 397 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 TAB3Q8N5C8 712 aaPredicted RBP5.22□□□□□ -1.57
NUP54-208ENST00000508604 DDX1Q92499 740 aaKnown RBP5.22□□□□□ -1.57
NUP54-208ENST00000508604 FCRL3Q96P31 734 aaPredicted RBP5.22□□□□□ -1.57
NUP54-208ENST00000508604 ZNRF3Q9ULT6 936 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 TIMELESSQ9UNS1 1208 aa5.22□□□□□ -1.57
NUP54-208ENST00000508604 TP53P04637 393 aaPredicted RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 PDIA4P13667 645 aaKnown RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 SARSP49591 514 aaKnown RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 TRIM26Q12899 539 aaPredicted RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 SLC9A5Q14940 896 aa5.21□□□□□ -1.57
NUP54-208ENST00000508604 CCDC27Q2M243 656 aa5.21□□□□□ -1.57
NUP54-208ENST00000508604 FBXW10Q5XX13 1052 aa5.21□□□□□ -1.57
NUP54-208ENST00000508604 PEX11GQ96HA9 241 aa5.21□□□□□ -1.57
NUP54-208ENST00000508604 NOL6Q9H6R4 1146 aaKnown RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 DIS3Q9Y2L1 958 aaKnown RBP5.21□□□□□ -1.57
NUP54-208ENST00000508604 A0A087WZG4 1122 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms