RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 ECEL1O95672 775 aa12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 PRPSAP1Q14558 356 aa12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 RARS2Q5T160 578 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 GJC2Q5T442 439 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 PROSER2Q86WR7 435 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 MYOCDQ8IZQ8 938 aa12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.2□□□□□ -0.462e-6■■■■■ 44.5
LIMCH1-208ENST00000508501 RIOK1Q9BRS2 568 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 ARMCX3Q9UH62 379 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-208ENST00000508501 IQCA1LA6NCM1 817 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 C16orf96A6NNT2 1141 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 SLFN14P0C7P3 912 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 KLC1Q07866 573 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 LRMPQ12912 555 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 CRLF3Q8IUI8 442 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 ZNF280CQ8ND82 737 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 LSM14BQ9BX40 385 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 FAM207AQ9NSI2 230 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 KLC4Q9NSK0 619 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 PODXLO00592 558 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 CAV1Q03135 178 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 TRIM50Q86XT4 487 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 DZIP3Q86Y13 1208 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 PARVBQ9HBI1 364 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 GOLGA8MH3BSY2 632 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 MYL1P05976 194 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 GCFC2P16383 781 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 YWHAGP61981 247 aaKnown RBP eCLIP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 GRIN1Q05586 938 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 KRT81Q14533 505 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 SLC35F6Q8N357 371 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 CARD10Q9BWT7 1032 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 PITPNM3Q9BZ71 974 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 STX18Q9P2W9 335 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 LCMT1Q9UIC8 334 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 TRIM33Q9UPN9 1127 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 MORC2Q9Y6X9 1032 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 EFCAB5A4FU69 1503 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 SBNO1A3KN83 1393 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 CHEK2O96017 543 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 GALNT17Q6IS24 598 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 KIRREL3Q8IZU9 778 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 STX19Q8N4C7 294 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 OSBPL1AQ9BXW6 950 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 SYBUQ9NX95 663 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 EHD2Q9NZN4 543 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 ATP11BQ9Y2G3 1177 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 PPME1Q9Y570 386 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 SESN1Q9Y6P5 492 aa12.19□□□□□ -0.46
LIMCH1-208ENST00000508501 CCDC78A2IDD5 438 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 F8W8V4 182 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 SGSM2O43147 1006 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 CCDC15Q0P6D6 951 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 MYSM1Q5VVJ2 828 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 CABP7Q86V35 215 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ZNF229Q9UJW7 825 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ZNF644Q9H582 1327 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 GMNCA6NCL1 334 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 SLC27A2O14975 620 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 SCG2P13521 617 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 HSPA9P38646 679 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 IL1RL1Q01638 556 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ACBD5Q5T8D3 534 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 DYDC2Q96IM9 177 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 TLK1Q9UKI8 766 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ECE1P42892 770 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 SLC17A8Q8NDX2 589 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ZBTB9Q96C00 473 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 FMO2Q99518 471 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 BLOC1S6Q9UL45 172 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 SNX14Q9Y5W7 946 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 RAB14P61106 215 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 MED21Q13503 144 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ADRM1Q16186 407 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 TSHZ3Q63HK5 1081 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 ZNF274Q96GC6 653 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 DACH2Q96NX9 599 aa12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 NOVA2Q9UNW9 492 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-208ENST00000508501 BACH1O14867 736 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 MYO1EQ12965 1108 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 CRYMQ14894 314 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 LONRF3Q496Y0 759 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 KRT40Q6A162 431 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 IFNL2Q8IZJ0 200 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 PANX2Q96RD6 677 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 SUCLA2Q9P2R7 463 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 POC1B-GALNT4F8VUJ3 575 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 STAM2O75886 525 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 CD19P15391 556 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 NUGGCQ68CJ6 796 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 TTC25Q96NG3 672 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 NLRC4Q9NPP4 1024 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 ANAPC5Q9UJX4 755 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 CD2APQ9Y5K6 639 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 ANO9A1A5B4 782 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 TRMT1LQ7Z2T5 733 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 DESI2Q9BSY9 194 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 ZMYND12Q9H0C1 365 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 C6orf229H3BNL8 230 aa12.17□□□□□ -0.46
LIMCH1-208ENST00000508501 GID8Q9NWU2 228 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms