RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 HAND2P61296 217 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 SMAD3P84022 425 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 BEX3Q00994 111 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 TNFAIP2Q03169 654 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 FPGSQ05932 587 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 GNASQ5JWF2 1037 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 NSMFQ6X4W1 530 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 NOL8Q76FK4 1167 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 RILPL2Q969X0 211 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 VTI1AQ96AJ9 217 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 RNPC3Q96LT9 517 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 TMEM47Q9BQJ4 181 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 RANBP17Q9H2T7 1088 aaKnown RBP13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 CYP39A1Q9NYL5 469 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 TBX21Q9UL17 535 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 MROH7Q68CQ1 1323 aa13.62□□□□□ -0.23
HMGCS1-204ENST00000507293 A0A0U1RQG5 324 aaPredicted RBP13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 ICAM1P05362 532 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 PTGS1P23219 599 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 CDK7P50613 346 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 NKX3-2P78367 333 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 SYDE2Q5VT97 1194 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 B4GALNT3Q6L9W6 998 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 BTNL9Q6UXG8 535 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 TLK2Q86UE8 772 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 TICAM2Q86XR7 235 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 TBC1D10CQ8IV04 446 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 SMC5Q8IY18 1101 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 YTHDC1Q96MU7 727 aaKnown RBP13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 PURBQ96QR8 312 aaKnown RBP13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 GPCPD1Q9NPB8 672 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 TCP11L1Q9NUJ3 509 aa13.61□□□□□ -0.23
HMGCS1-204ENST00000507293 MYH6P13533 1939 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 ARVCFO00192 962 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 TIMP1P01033 207 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 SMPD1P17405 629 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 AKNAD1Q5T1N1 836 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 EEPD1Q7L9B9 569 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 FBXO16Q8IX29 292 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 FAM126BQ8IXS8 530 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 RWDD1Q9H446 243 aaPredicted RBP13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 PDGFCQ9NRA1 345 aa13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 GNEQ9Y223 722 aaKnown RBP13.6□□□□□ -0.23
HMGCS1-204ENST00000507293 GBF1Q92538 1859 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 NFIBO00712 420 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 TLR3O15455 904 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 PDHBP11177 359 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 SDSP20132 328 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 AAMPQ13685 434 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 FSCN1Q16658 493 aaKnown RBP13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 TAPT1Q6NXT6 567 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 CXCL17Q6UXB2 119 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 MFSD6Q6ZSS7 791 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 CHD1LQ86WJ1 897 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 CDX2Q99626 313 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 AP5M1Q9H0R1 490 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 TTYH1Q9H313 450 aaPredicted RBP13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 SEMA6BQ9H3T3 888 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 NEDD4P46934 1319 aa13.59□□□□□ -0.23
HMGCS1-204ENST00000507293 DYNC1LI2O43237 492 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 PCP11498 1178 aaKnown RBP13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 ALDH5A1P51649 535 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 MFAP1P55081 439 aaKnown RBP13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 ZNF543Q08ER8 600 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 BAATQ14032 418 aaPredicted RBP13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 TMEM63BQ5T3F8 832 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 MFSD5Q6N075 450 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 SLC30A10Q6XR72 485 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 PLEKHM2Q8IWE5 1019 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 MORC4Q8TE76 937 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.58□□□□□ -0.248e-27■□□□□ 10.1
HMGCS1-204ENST00000507293 PPP1R12CQ9BZL4 782 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 VTA1Q9NP79 307 aa13.58□□□□□ -0.24
HMGCS1-204ENST00000507293 COL6A3P12111 3177 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 PTPDC1A2A3K4 754 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 CABYRO75952 493 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 IGHDP01880 384 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 NUCB1Q02818 461 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 PPIGQ13427 754 aaKnown RBP eCLIP13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 IQSEC1Q6DN90 963 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 KIAA1211Q6ZU35 1233 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 CLEC4DQ8WXI8 215 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 MYLIPQ8WY64 445 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 TTC14Q96N46 770 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 ZKSCAN3Q9BRR0 538 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 OSBPL3Q9H4L5 887 aa13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 RNF41Q9H4P4 317 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 ADD3Q9UEY8 706 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-204ENST00000507293 ZEB2O60315 1214 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 CD4P01730 458 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 SNHG28P0DPA3 235 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 CSF2RAP15509 400 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 CALML3P27482 149 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 ITGA7Q13683 1181 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 CWC27Q6UX04 472 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 TMEM199Q8N511 208 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 SLC43A3Q8NBI5 491 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
HMGCS1-204ENST00000507293 ESR2Q92731 530 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms