RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CCDC144CPQ8IYA2 1237 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 COA7Q96BR5 231 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 EFCC1Q9HA90 598 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 VAT1LQ9HCJ6 419 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 FAM217BQ9NTX9 383 aaPredicted RBP13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 NAP1L2Q9ULW6 460 aaPredicted RBP13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 HPS5Q9UPZ3 1129 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 RIPK3Q9Y572 518 aa13.83□□□□□ -0.2
PDLIM5-208ENST00000504489 TNPO2O14787 897 aaKnown RBP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 STRNO43815 780 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 DHX16O60231 1041 aaKnown RBP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 PLEKHA8P1O95397 391 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 METAP2P50579 478 aaKnown RBP eCLIP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 PRMT2P55345 433 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 CDC37Q16543 378 aaPredicted RBP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 CCDC174Q6PII3 467 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 TMTC3Q6ZXV5 915 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 OTOP1Q7RTM1 612 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 GPR142Q7Z601 462 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 PLEKHH3Q7Z736 793 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 CTU1Q7Z7A3 348 aaKnown RBP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 NCAPG2Q86XI2 1143 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 SRBD1Q8N5C6 995 aaKnown RBP13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 AGBL1Q96MI9 1066 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 TRIM17Q9Y577 477 aa13.82□□□□□ -0.2
PDLIM5-208ENST00000504489 ZBTB5O15062 677 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 PTPREP23469 700 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 CDC27P30260 824 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 FUT2Q10981 343 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 QRICH1Q2TAL8 776 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 ABRAQ8N0Z2 381 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 CHST13Q8NET6 341 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 LARP6Q9BRS8 491 aaKnown RBP13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 SRRDQ9UH36 339 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 FBXO40Q9UH90 709 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 GJD2Q9UKL4 321 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 CCPG1Q9ULG6 757 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 TPCN1Q9ULQ1 816 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 IVNS1ABPQ9Y6Y0 642 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 KIAA1217Q5T5P2 1943 aa13.81□□□□□ -0.2
PDLIM5-208ENST00000504489 PNMA6FA0A0J9YX94 578 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 SLC15A5A6NIM6 579 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 ECM2O94769 699 aaPredicted RBP13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 ADD1P35611 737 aaKnown RBP13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 TRAF1Q13077 416 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 PKN2Q16513 984 aaKnown RBP13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 MORN1Q5T089 497 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 WDR78Q5VTH9 848 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 MAMSTRQ6ZN01 415 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 FBXO11Q86XK2 927 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 RRP36Q96EU6 259 aaKnown RBP13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 TRERF1Q96PN7 1200 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 PIGSQ96S52 555 aa13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 CWC22Q9HCG8 908 aaKnown RBP13.8□□□□□ -0.2
PDLIM5-208ENST00000504489 POTEFA5A3E0 1075 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 PFKFB2O60825 505 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 FCER1AP12319 257 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 ALAS1P13196 640 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 SLC4A3P48751 1232 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 IRF5Q13568 498 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 GRB14Q14449 540 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 NTRK3Q16288 839 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 CMTR1Q8N1G2 835 aaKnown RBP13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 SOCS4Q8WXH5 440 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 USP6NLQ92738 828 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 NUDT12Q9BQG2 462 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 AMNQ9BXJ7 453 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 MAF1Q9H063 256 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 ACAD9Q9H845 621 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 RNF146Q9NTX7 359 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 GABRQQ9UN88 632 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 PTPN22Q9Y2R2 807 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 ABCB11O95342 1321 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 CNTNAP5Q8WYK1 1306 aa13.79□□□□□ -0.2
PDLIM5-208ENST00000504489 ST18O60284 1047 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 PPP1R11O60927 126 aaPredicted RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 IFNAR1P17181 557 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 FLT3LGP49771 235 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 CCT2P78371 535 aaKnown RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 PRKCZQ05513 592 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 MAP2K5Q13163 448 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 HOMER1Q86YM7 354 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 CCDC82Q8N4S0 544 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 MMP19Q99542 508 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 NCOA5Q9HCD5 579 aaKnown RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 HOMER2Q9NSB8 354 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 SEC63Q9UGP8 760 aaKnown RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 LIMCH1Q9UPQ0 1083 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 COLQQ9Y215 455 aaPredicted RBP13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 MYH7BA7E2Y1 1941 aa13.78□□□□□ -0.2
PDLIM5-208ENST00000504489 DNAJC25-GNG10A0A024R161 153 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 HOXC6P09630 235 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 XRCC5P13010 732 aaKnown RBP13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 ADORA2AP29274 412 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 RGS2P41220 211 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 STK3Q13188 491 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 KCTD2Q14681 263 aa13.77□□□□□ -0.21
PDLIM5-208ENST00000504489 ME3Q16798 604 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms