RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TSC1Q92574 1164 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 TEKT1Q969V4 418 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 CALML4Q96GE6 196 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 EHD4Q9H223 541 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 TTF2Q9UNY4 1162 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 MTMR7Q9Y216 660 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 BRCA1P38398 1863 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 MYH4Q9Y623 1939 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 BICDL2A1A5D9 508 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 N4BP3O15049 544 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 MFAP3LO75121 409 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 LETM2Q2VYF4 491 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 TCP11X2Q5H9J9 407 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 SLC51AQ86UW1 340 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 FAM114A1Q8IWE2 563 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 REXO1L1PQ8IX06 675 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 ADSSL1Q8N142 457 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 ZNF397Q8NF99 534 aaPredicted RBP13.47□□□□□ -0.25
NUP54-202ENST00000502850 MASTLQ96GX5 879 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 DHTKD1Q96HY7 919 aaPredicted RBP13.47□□□□□ -0.25
NUP54-202ENST00000502850 CCDC17Q96LX7 622 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 LRRC27Q9C0I9 530 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 TMEM60Q9H2L4 133 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 THAP9Q9H5L6 903 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 MAGEC2Q9UBF1 373 aaPredicted RBP13.47□□□□□ -0.25
NUP54-202ENST00000502850 DNAI1Q9UI46 699 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 ZNF215Q9UL58 517 aaPredicted RBP13.47□□□□□ -0.25
NUP54-202ENST00000502850 BCS1LQ9Y276 419 aa13.47□□□□□ -0.25
NUP54-202ENST00000502850 KCNJ18B7U540 433 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 CASP1P29466 404 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 COPB1P53618 953 aaKnown RBP13.46□□□□□ -0.25
NUP54-202ENST00000502850 PICALMQ13492 652 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 KCNJ12Q14500 433 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 KRT31Q15323 416 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 NAALADL2Q58DX5 795 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 SMYD4Q8IYR2 804 aaPredicted RBP13.46□□□□□ -0.25
NUP54-202ENST00000502850 PIGSQ96S52 555 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 MTRQ99707 1265 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 MRIQ9BWK5 157 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 STK17AQ9UEE5 414 aa13.46□□□□□ -0.25
NUP54-202ENST00000502850 USP17L5A8MUK1 530 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 RIMBP2O15034 1052 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 ADAMTS3O15072 1205 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 KCNA3P22001 575 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 FECHP22830 423 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 ADKP55263 362 aaKnown RBP13.46□□□□□ -0.26
NUP54-202ENST00000502850 HDLBPQ00341 1268 aaKnown RBP13.46□□□□□ -0.26
NUP54-202ENST00000502850 COBLL1Q53SF7 1204 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 CCDC93Q567U6 631 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 PODNQ7Z5L7 613 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 TMTC1Q8IUR5 882 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 GIMAP8Q8ND71 665 aaPredicted RBP13.46□□□□□ -0.26
NUP54-202ENST00000502850 STAMQ92783 540 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 C7orf25Q9BPX7 421 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 DHX36Q9H2U1 1008 aaKnown RBP13.46□□□□□ -0.26
NUP54-202ENST00000502850 EXOC1Q9NV70 894 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 USP40Q9NVE5 1235 aa13.46□□□□□ -0.26
NUP54-202ENST00000502850 PNMA6FA0A0J9YX94 578 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 A0A1W2PQC6 194 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 SLC26A4O43511 780 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 CASQ1P31415 396 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 FXR2P51116 673 aaKnown RBP eCLIP13.45□□□□□ -0.26
NUP54-202ENST00000502850 C1QTNF8P60827 252 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 ZNF543Q08ER8 600 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 CALCRLQ16602 461 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 KMT5BQ4FZB7 885 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 CNNM4Q6P4Q7 775 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 TRIM65Q6PJ69 517 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 TBCKQ8TEA7 893 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 IQCDQ96DY2 449 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 PIM2Q9P1W9 311 aa13.45□□□□□ -0.26
NUP54-202ENST00000502850 ARFGEF1Q9Y6D6 1849 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 TEX33O43247 280 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 NPM3O75607 178 aaKnown RBP13.44□□□□□ -0.26
NUP54-202ENST00000502850 AKR1B1P15121 316 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 GCFC2P16383 781 aaKnown RBP13.44□□□□□ -0.26
NUP54-202ENST00000502850 PLCG1P19174 1290 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 PRCPP42785 496 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 MRPL12P52815 198 aaKnown RBP13.44□□□□□ -0.26
NUP54-202ENST00000502850 RBL2Q08999 1139 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 TUBB2AQ13885 445 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 MCTP2Q6DN12 878 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 ARHGAP27Q6ZUM4 889 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 MNS1Q8NEH6 495 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 CUL5Q93034 780 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 CDK5RAP3Q96JB5 506 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 TRIM47Q96LD4 638 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 TUBB2BQ9BVA1 445 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 RIC8AQ9NPQ8 531 aa13.44□□□□□ -0.26
NUP54-202ENST00000502850 KLRC4O43908 158 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 CCT6AP40227 531 aaKnown RBP13.43□□□□□ -0.26
NUP54-202ENST00000502850 GNG11P61952 73 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 GOLGA8FQ08AF8 430 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 GOLGA8DPQ0D2H9 430 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 PDIA5Q14554 519 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 PPP4R3AQ6IN85 833 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 CYP26C1Q6V0L0 522 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 LRRC47Q8N1G4 583 aaKnown RBP13.43□□□□□ -0.26
NUP54-202ENST00000502850 CERS5Q8N5B7 392 aa13.43□□□□□ -0.26
NUP54-202ENST00000502850 ZDHHC15Q96MV8 337 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms