RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 POMZP3Q6PJE2 187 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 SYDE1Q6ZW31 735 aaPredicted RBP9.04□□□□□ -0.96
SF3B1-212ENST00000496458 ST7Q9NRC1 585 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQ27 194 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQ64 194 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQC6 194 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQD8 194 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 C2orf71A6NGG8 1288 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 TBC1D8O95759 1140 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 PKN1Q16512 942 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 ACSL6Q9UKU0 697 aa9.03□□□□□ -0.96
SF3B1-212ENST00000496458 OR14I1A6ND48 311 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 ARL4AP40617 200 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 CYP4F8P98187 520 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 KRTAP19-1Q8IUB9 90 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 TRIM59Q8IWR1 403 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 C8orf37Q96NL8 207 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 TANGO6Q9C0B7 1094 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 LRP2BPQ9P2M1 347 aa9.02□□□□□ -0.97
SF3B1-212ENST00000496458 KLF4O43474 513 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 STK10O94804 968 aaKnown RBP9.01□□□□□ -0.97
SF3B1-212ENST00000496458 LAPTM5Q13571 262 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 DDR2Q16832 855 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 GTF2IRD2BQ6EKJ0 949 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 EEPD1Q7L9B9 569 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 GTF2IRD2Q86UP8 949 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 MRGPRX3Q96LB0 322 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 SLC26A8Q96RN1 970 aa9.01□□□□□ -0.97
SF3B1-212ENST00000496458 ZNF552Q9H707 407 aaPredicted RBP9.01□□□□□ -0.97
SF3B1-212ENST00000496458 ITGAVP06756 1048 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 MSL3P1P0C860 447 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 L1CAMP32004 1257 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 MVKQ03426 396 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 SCRN1Q12765 414 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 ZNF227Q86WZ6 799 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 BTN2A2Q8WVV5 523 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 PPP1R16BQ96T49 567 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 MCOLN1Q9GZU1 580 aa9□□□□□ -0.97
SF3B1-212ENST00000496458 MYOCOSA0A1B0GUC4 107 aa8.99□□□□□ -0.97
SF3B1-212ENST00000496458 TBX1O43435 398 aa8.99□□□□□ -0.97
SF3B1-212ENST00000496458 YBX3P16989 372 aaKnown RBP eCLIP8.99□□□□□ -0.972e-12■□□□□ 9.6
SF3B1-212ENST00000496458 ERVFRD-1P60508 538 aa8.99□□□□□ -0.97
SF3B1-212ENST00000496458 CPNE8Q86YQ8 564 aa8.99□□□□□ -0.97
SF3B1-212ENST00000496458 PAMP19021 973 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 ATP2B1P20020 1258 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 TACR1P25103 407 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 SLC10A6Q3KNW5 377 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 CKAP2LQ8IYA6 745 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 BHLHE22Q8NFJ8 381 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-212ENST00000496458 TRIM55Q9BYV6 548 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 NKX2-4Q9H2Z4 354 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 TNFRSF12AQ9NP84 129 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 GPRC5CQ9NQ84 441 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 CLEC1BQ9P126 229 aa8.98□□□□□ -0.97
SF3B1-212ENST00000496458 PPP1R1BQ9UD71 204 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-212ENST00000496458 NPHP3-ACAD11A0A0J9YXS1 232 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 A0A1W2PQJ5 194 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 NUDT19A8MXV4 375 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 NFIBO00712 420 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 PEX10O60683 326 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 TSPAN15O95858 294 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 MPOP05164 745 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 RAB33AQ14088 237 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 COPS5Q92905 334 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 KCNN1Q92952 543 aa8.97□□□□□ -0.97
SF3B1-212ENST00000496458 ETV2O00321 342 aaPredicted RBP8.96□□□□□ -0.98
SF3B1-212ENST00000496458 KRT1P04264 644 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 THBDP07204 575 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 TMEM253P0C7T8 217 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 C1QTNF9P0C862 333 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 PLS3P13797 630 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 RAP1GAPP47736 663 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 CORO7P57737 925 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 RAB3GAP1Q15042 981 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 TMEM132EQ6IEE7 984 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 EPN3Q9H201 632 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 PDLIM7Q9NR12 457 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 CYP26B1Q9NR63 512 aa8.96□□□□□ -0.98
SF3B1-212ENST00000496458 TRBV23OR9-2A0A075B6M9 112 aa8.95□□□□□ -0.98
SF3B1-212ENST00000496458 GTF2F1P35269 517 aaKnown RBP eCLIP8.95□□□□□ -0.98
SF3B1-212ENST00000496458 SRSF3P84103 164 aaKnown RBP8.95□□□□□ -0.98
SF3B1-212ENST00000496458 BICRALQ6AI39 1079 aa8.95□□□□□ -0.98
SF3B1-212ENST00000496458 KLHL14Q9P2G3 628 aa8.95□□□□□ -0.98
SF3B1-212ENST00000496458 TEX51A0A1B0GUA7 166 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 AGRPO00253 132 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 SEMA7AO75326 666 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 SNRPB2P08579 225 aaKnown RBP8.94□□□□□ -0.98
SF3B1-212ENST00000496458 VIPR1P32241 457 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 YBX1P67809 324 aaKnown RBP8.94□□□□□ -0.98
SF3B1-212ENST00000496458 CYP4F3Q08477 520 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 ATG14Q6ZNE5 492 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 SGPP1Q9BX95 441 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 GULP1Q9UBP9 304 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 RWDD3Q9Y3V2 267 aa8.94□□□□□ -0.98
SF3B1-212ENST00000496458 TCAF2A6NFQ2 919 aa8.93□□□□□ -0.98
SF3B1-212ENST00000496458 HRKO00198 91 aa8.93□□□□□ -0.98
SF3B1-212ENST00000496458 ABLIM1O14639 778 aa8.93□□□□□ -0.98
SF3B1-212ENST00000496458 U2SURPO15042 1029 aaKnown RBP8.93□□□□□ -0.98
SF3B1-212ENST00000496458 GLDCP23378 1020 aa8.93□□□□□ -0.98
SF3B1-212ENST00000496458 ECI1P42126 302 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms