RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GPR161Q8N6U8 529 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 ANKS1AQ92625 1134 aa18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 DDX60LQ5H9U9 1706 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-210ENST00000494566 GPR75-ASB3A0A0A6YYF3 556 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 SMCO2A6NFE2 343 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 PARP1P09874 1014 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 C16orf86Q6ZW13 317 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 C10orf67Q8IYJ2 551 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 AFF2P51816 1311 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 PBX1P40424 430 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 GNAQP50148 359 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 ERVK-24P63145 666 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 FOXR1Q6PIV2 292 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 HPS3Q969F9 1004 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 SH3GLB2Q9NR46 395 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 SCNN1DP51172 638 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 TXNRD1Q16881 649 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 FILIP1LQ4L180 1135 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 ZNF658Q5TYW1 1059 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 ARL6IP4Q66PJ3 421 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 RSRC2Q7L4I2 434 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 COA7Q96BR5 231 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 RBM17Q96I25 401 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 SRRTQ9BXP5 876 aaKnown RBP18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 ANKZF1Q9H8Y5 726 aa18.56■□□□□ 0.56
CCDC88B-210ENST00000494566 LY75O60449 1722 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 KCNJ18B7U540 433 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 ATP2B4P23634 1241 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 TECP42680 631 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 VSNL1P62760 191 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 RAD51AP2Q09MP3 1159 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 KCNJ12Q14500 433 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 CRY2Q49AN0 593 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 CCDC148Q8NFR7 591 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 ADAM21Q9UKJ8 722 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 UTRNP46939 3433 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 THSD7AQ9UPZ6 1657 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 TRIM37O94972 964 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 IL1R1P14778 569 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 DOK7Q18PE1 504 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 CALCOCO1Q9P1Z2 691 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 DAGLAQ9Y4D2 1042 aa18.55■□□□□ 0.56
CCDC88B-210ENST00000494566 MFAP3LO75121 409 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 PLCG1P19174 1290 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 COPB1P53618 953 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 TRIM34Q9BYJ4 488 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 GPCPD1Q9NPB8 672 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 DDX4Q9NQI0 724 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 TCP11L1Q9NUJ3 509 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 RWDD2AQ9UIY3 292 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 FAN1Q9Y2M0 1017 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 KRT9P35527 623 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 TCP11X2Q5H9J9 407 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 FCHSD1Q86WN1 690 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 NEDD1Q8NHV4 660 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 RIN2Q8WYP3 895 aaPredicted RBP18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 DRC1Q96MC2 740 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 MYH1P12882 1939 aa18.54■□□□□ 0.56
CCDC88B-210ENST00000494566 TNNT3P45378 269 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 ATP2B2Q01814 1243 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 POTEDQ86YR6 584 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 TBCKQ8TEA7 893 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 PSMB7Q99436 277 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 AKR1B1P15121 316 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 UBXN1Q04323 297 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 ZSCAN26Q16670 478 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 SRGAP1Q7Z6B7 1085 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 IRF2BP1Q8IU81 584 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 GJA10Q969M2 543 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 NKRFO15226 690 aaKnown RBP eCLIP18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 RAD21O60216 631 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 KLK7P49862 253 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 DPP8Q6V1X1 898 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 PLCD3Q8N3E9 789 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 RRP36Q96EU6 259 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 CTAGE1Q96RT6 745 aa18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 SEC63Q9UGP8 760 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-210ENST00000494566 CTAGE9A4FU28 777 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 KLRC4O43908 158 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 CCDC178Q5BJE1 867 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 CABP7Q86V35 215 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 CERS5Q8N5B7 392 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 CERKQ8TCT0 537 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 RABGGTAQ92696 567 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 PANX2Q96RD6 677 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 ZMYND12Q9H0C1 365 aa18.52■□□□□ 0.56
CCDC88B-210ENST00000494566 TXKP42681 527 aa18.52■□□□□ 0.55
CCDC88B-210ENST00000494566 NONOQ15233 471 aaKnown RBP eCLIP18.52■□□□□ 0.55
CCDC88B-210ENST00000494566 PCMTD1Q96MG8 357 aaPredicted RBP18.52■□□□□ 0.55
CCDC88B-210ENST00000494566 FCER1AP12319 257 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 SOGA3Q5TF21 947 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 LIMA1Q9UHB6 759 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 FAM170AA1A519 330 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 FAM196BA6NMK8 535 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 OR52Z1P0C646 297 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 SHROOM1Q2M3G4 852 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 ADSSL1Q8N142 457 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 DAGLBQ8NCG7 672 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 TRIM47Q96LD4 638 aa18.51■□□□□ 0.55
CCDC88B-210ENST00000494566 SPZ1Q9BXG8 430 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms