RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TRIM66	O15016	1216 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	SHMT1	P34896	483 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	CAP2	P40123	477 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	KIF23	Q02241	960 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	GABPA	Q06546	454 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	E2F4	Q16254	413 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	GAS2L3	Q86XJ1	694 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	GIMAP7	Q8NHV1	300 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	HDAC7	Q8WUI4	952 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	CHMP5	Q9NZZ3	219 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZSCAN9	O15535	394 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZBTB48	P10074	688 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	XBP1	P17861	261 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	PPARA	Q07869	468 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	GPS2	Q13227	327 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	CRYM	Q14894	314 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	CERKL	Q49MI3	558 aa	Predicted RBP	13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	SBK1	Q52WX2	424 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	CCDC70	Q6NSX1	233 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	SWAP70	Q9UH65	585 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919	ROBO3	Q96MS0	1386 aa		13.1	□□□□□ -0.31
BRCA1-222	ENST00000493919		F8VZ95	297 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	CDC45	O75419	566 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	GH2	P01242	217 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	ASNS	P08243	561 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	PTPRA	P18433	802 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	CDK8	P49336	464 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	HAND2	P61296	217 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	C16orf86	Q6ZW13	317 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	HSCB	Q8IWL3	235 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	SLK	Q9H2G2	1235 aa	Predicted RBP	13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZBTB21	Q9ULJ3	1066 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZHX2	Q9Y6X8	837 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	TRIM75P	A6NK02	468 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	PRDM1	O75626	825 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	FGA	P02671	866 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	GCFC2	P16383	781 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	GJA8	P48165	433 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	JAG1	P78504	1218 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	CTDSPL2	Q05D32	466 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	DEUP1	Q05D60	604 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	PPAT	Q06203	517 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	PPIL2	Q13356	520 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	RAB3GAP1	Q15042	981 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	ABCB5	Q2M3G0	1257 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	LARP1B	Q659C4	914 aa	Known RBP	13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	TATDN1	Q6P1N9	297 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	TTC30B	Q8N4P2	665 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	GPT2	Q8TD30	523 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	PIBF1	Q8WXW3	757 aa		13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	FBXO9	Q9UK97	447 aa	Predicted RBP	13.09	□□□□□ -0.31
BRCA1-222	ENST00000493919	LAMA4	Q16363	1823 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	SLC3A2	P08195	630 aa	Known RBP	13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	PECAM1	P16284	738 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	ZNF24	P17028	368 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	NUCB2	P80303	420 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	MKNK2	Q9HBH9	465 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	CABP5	Q9NP86	173 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919		V9GYY5	206 aa	Predicted RBP	13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	PHIP	Q8WWQ0	1821 aa		13.08	□□□□□ -0.32
BRCA1-222	ENST00000493919	CCL15-CCL14	A0A0B4J2E2	113 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	SREBF2	Q12772	1141 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	DBN1	Q16643	649 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	CCL15	Q16663	113 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	GOLGA5	Q8TBA6	731 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	ESYT1	Q9BSJ8	1104 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	DSCC1	Q9BVC3	393 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	YIPF2	Q9BWQ6	316 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	SEZ6L	Q9BYH1	1024 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	ZMYM6	O95789	1325 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	MANSC4	A6NHS7	340 aa	Predicted RBP	13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	USP17L5	A8MUK1	530 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	AKR1B1	P15121	316 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	GTF2A2	P52657	109 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	PDE4B	Q07343	736 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	SNAPC2	Q13487	334 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	ALX1	Q15699	326 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	TTC30A	Q86WT1	665 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	CCDC47	Q96A33	483 aa	Known RBP	13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	BEGAIN	Q9BUH8	593 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	AS3MT	Q9HBK9	375 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	ZNF287	Q9HBT7	754 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	IGSF5	Q9NSI5	407 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	SPTLC3	Q9NUV7	552 aa		13.07	□□□□□ -0.32
BRCA1-222	ENST00000493919	FMNL1	O95466	1100 aa	Predicted RBP	13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	HARS	P12081	509 aa	Known RBP	13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	FOSB	P53539	338 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	SYNE3	Q6ZMZ3	975 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	CLEC10A	Q8IUN9	316 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	TCP11	Q8WWU5	503 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	BAG1	Q99933	345 aa	Predicted RBP	13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	SPOCK3	Q9BQ16	436 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	SENP7	Q9BQF6	1050 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	ANO2	Q9NQ90	1003 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	PTPRF	P10586	1907 aa		13.06	□□□□□ -0.32
BRCA1-222	ENST00000493919	RASA1	P20936	1047 aa		13.05	□□□□□ -0.32
BRCA1-222	ENST00000493919	PTH1R	Q03431	593 aa		13.05	□□□□□ -0.32
BRCA1-222	ENST00000493919	SPP2	Q13103	211 aa		13.05	□□□□□ -0.32
BRCA1-222	ENST00000493919	SEPT2	Q15019	361 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms