RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 PLBD2Q8NHP8 589 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 RASSF8Q8NHQ8 419 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 THOC1Q96FV9 657 aaKnown RBP12.99□□□□□ -0.33
HDAC4-210ENST00000493582 UBAC1Q9BSL1 405 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 SH2D4AQ9H788 454 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 BAIAP2L1Q9UHR4 511 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 RIPOR2Q9Y4F9 1068 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 PLEKHG1Q9ULL1 1385 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 USO1O60763 962 aaKnown RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 PRLRP16471 622 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 MCAMP43121 646 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 DNM2P50570 870 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 SARNPP82979 210 aaKnown RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 FERMT2Q96AC1 680 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 SEC16BQ96JE7 1060 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 TRIM47Q96LD4 638 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.98□□□□□ -0.335e-6■■■■■ 34.6
HDAC4-210ENST00000493582 SLC52A2Q9HAB3 445 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 GDF3Q9NR23 364 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 BCCIPQ9P287 314 aaKnown RBP eCLIP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 PDS5AQ29RF7 1337 aaKnown RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 DDX60Q8IY21 1712 aaKnown RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 EME2A4GXA9 379 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 HMGB1P1B2RPK0 211 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 BUB1O43683 1085 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 GTPBP6O43824 516 aaPredicted RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 SNRPA1P09661 255 aaKnown RBP12.98□□□□□ -0.33
HDAC4-210ENST00000493582 SRGNP10124 158 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 PEX19P40855 299 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 ZBED6P86452 979 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 C11orf91Q3C1V1 193 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 PPP4R3AQ6IN85 833 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 TUBGCP2Q9BSJ2 902 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 TLR10Q9BXR5 811 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 ZNF532Q9HCE3 1301 aa12.98□□□□□ -0.33
HDAC4-210ENST00000493582 TNFRSF8P28908 595 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 CDC25CP30307 473 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 GCKP35557 465 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 PAK2Q13177 524 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 GLE1Q53GS7 698 aaKnown RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 MAGEC3Q8TD91 643 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 CASKIN2Q8WXE0 1202 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 TSGA10Q9BZW7 698 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 EXOC1Q9NV70 894 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 CWC25Q9NXE8 425 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 SLC8A1P32418 973 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 IRX1P78414 480 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 TTLL7Q6ZT98 887 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 C2CD5Q86YS7 1000 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 CD302Q8IX05 232 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 ADSSL1Q8N142 457 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 FANCBQ8NB91 859 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 ZNF483Q8TF39 744 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 SPDL1Q96EA4 605 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 STAMBPL1Q96FJ0 436 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 KIF9Q9HAQ2 790 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 MAGEC2Q9UBF1 373 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 MYH13Q9UKX3 1938 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 TRAPPC3O43617 180 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 EEF1GP26641 437 aaKnown RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 BYSLQ13895 437 aaKnown RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 WTAPQ15007 396 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 HIBCHQ6NVY1 386 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 KRT12Q99456 494 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 NOD2Q9HC29 1040 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 PIH1D3Q9NQM4 214 aaKnown RBP12.97□□□□□ -0.33
HDAC4-210ENST00000493582 ARHGAP20Q9P2F6 1191 aa12.97□□□□□ -0.33
HDAC4-210ENST00000493582 PHF20L1A8MW92 1017 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 KIF3CO14782 793 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 MGRN1O60291 552 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CIAO1O76071 339 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CALRP27797 417 aaKnown RBP12.96□□□□□ -0.33
HDAC4-210ENST00000493582 MYO1EQ12965 1108 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 GRIK3Q13003 919 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 XRCC4Q13426 336 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 IL17AQ16552 155 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CCDC57Q2TAC2 916 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 ODF2Q5BJF6 829 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CHADLQ6NUI6 762 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 NSMCE1Q8WV22 266 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 GOLGA6L10A6NI86 522 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CSB-PGBD3P0DP91 1061 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 KRT2P35908 639 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 PPP1R7Q15435 360 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CDC37Q16543 378 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-210ENST00000493582 CACNA2D3Q8IZS8 1091 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 TTC5Q8N0Z6 440 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 ALS2CR12Q96Q35 445 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 ZBTB3Q9H5J0 574 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 TMBIM4Q9HC24 238 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 L3MBTL1Q9Y468 752 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 TNRQ92752 1358 aa12.96□□□□□ -0.33
HDAC4-210ENST00000493582 ATP6V1G2O95670 118 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 EIF4A3P38919 411 aaKnown RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 KIF11P52732 1056 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 ELF3P78545 371 aaPredicted RBP12.95□□□□□ -0.34
HDAC4-210ENST00000493582 CFAP221Q4G0U5 840 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 TTC38Q5R3I4 469 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 ARMC2Q8NEN0 867 aa12.95□□□□□ -0.34
HDAC4-210ENST00000493582 HVCN1Q96D96 273 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms