RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 SGMS1Q86VZ5 419 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 MAP4K3Q8IVH8 894 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 MB21D2Q8IYB1 491 aaPredicted RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 KRT222Q8N1A0 295 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 TRIML1Q8N9V2 468 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 FSIP1Q8NA03 581 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 SPC24Q8NBT2 197 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 TTC9Q92623 222 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 APPBP2Q92624 585 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 USP28Q96RU2 1077 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 DBNDD2Q9BQY9 259 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 TUBB2BQ9BVA1 445 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS41-214ENST00000490924 MRPL18Q9H0U6 180 aaKnown RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 SRA1Q9HD15 236 aaKnown RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 HOOK1Q9UJC3 728 aaKnown RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 HPSEQ9Y251 543 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 MYH15Q9Y2K3 1946 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 MAST3O60307 1309 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 NEDD4P46934 1319 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 WDR17Q8IZU2 1322 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 CDHR2Q9BYE9 1310 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 PCDH11XQ9BZA7 1347 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 PCDH11YQ9BZA8 1340 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 NUP188Q5SRE5 1749 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 RGPD2P0DJD1 1756 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 CCDC69A6NI79 296 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 SLC3A2P08195 630 aaKnown RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 U2AF2P26368 475 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS41-214ENST00000490924 LIFRP42702 1097 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 UBE3CQ15386 1083 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 CCDC93Q567U6 631 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 CCDC158Q5M9N0 1113 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 AXDND1Q5T1B0 1012 aaPredicted RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 NT5DC1Q5TFE4 455 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 LMBR1LQ6UX01 489 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 SYNE3Q6ZMZ3 975 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 NCOA7Q8NI08 942 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 WASF1Q92558 559 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 CCDC34Q96HJ3 373 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 C8orf76Q96K31 380 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 TMEM87BQ96K49 555 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 C16orf45Q96MC5 204 aaPredicted RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 MPHOSPH8Q99549 860 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 SDF4Q9BRK5 362 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 ISCA1Q9BUE6 129 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 SMG9Q9H0W8 520 aaKnown RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 SIL1Q9H173 461 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 TMX1Q9H3N1 280 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 TFIP11Q9UBB9 837 aaKnown RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 PCDHA7Q9UN72 937 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 TAF6LQ9Y6J9 622 aa6.7□□□□□ -1.34
VPS41-214ENST00000490924 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.7□□□□□ -1.34
VPS41-214ENST00000490924 COL22A1Q8NFW1 1626 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 KRTAP9-6A0A140TA67 174 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 CYP27B1O15528 508 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ARHGAP6O43182 974 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ZSCAN12O43309 604 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 PCCAP05165 728 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 CSF1RP07333 972 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 TUBBP07437 444 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 IFIT1P09914 478 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 FDPSP14324 419 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 H2AFXP16104 143 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 IGFBP4P22692 258 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 NOS3P29474 1203 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 IRAK1P51617 712 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ETF1P62495 437 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 GPLD1P80108 840 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 MYL5Q02045 173 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 KIF23Q02241 960 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 MLLT1Q03111 559 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 AIMP1Q12904 312 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 LRMPQ12912 555 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 TRDNQ13061 729 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 BMS1Q14692 1282 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 STK38Q15208 465 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 CCDC144BQ3MJ40 725 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 HSP90AB3PQ58FF7 597 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 PERM1Q5SV97 790 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 JAKMIP3Q5VZ66 844 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ANO1Q5XXA6 986 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 FAM173BQ6P4H8 233 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 PRR23CQ6ZRP0 262 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 C11orf57Q6ZUT1 292 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 FILIP1Q7Z7B0 1213 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 CCDC144CPQ8IYA2 1237 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 CACTIN-AS1Q8N1I8 211 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 TRPM4Q8TD43 1214 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 DDX11Q96FC9 970 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 DNAJC2Q99543 621 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 MUC3BQ9H195 1237 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 GOLPH3LQ9H4A5 285 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ARGLU1Q9NWB6 273 aaPredicted RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 NAGPAQ9UK23 515 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 ANGEL1Q9UNK9 670 aaKnown RBP6.69□□□□□ -1.34
VPS41-214ENST00000490924 TJP1Q07157 1748 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 KCPQ6ZWJ8 1503 aa6.69□□□□□ -1.34
VPS41-214ENST00000490924 A0A1B0GUL7 405 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms