RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 YWHAEP62258 255 aaKnown RBP7.9□□□□□ -1.14
SYNE1-228ENST00000490135 ADCY1Q08828 1119 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 LZTS2Q9BRK4 669 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 AZI2Q9H6S1 392 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 ATXN10Q9UBB4 475 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 HPCAL4Q9UM19 191 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 MAGEB6P1A0A0J9YX57 407 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 TRAF5O00463 557 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 KRT19P08727 400 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 MARCKSP29966 332 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-228ENST00000490135 BLVRAP53004 296 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 PDE1BQ01064 536 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 C11orf91Q3C1V1 193 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 BZW1Q7L1Q6 419 aaKnown RBP7.9□□□□□ -1.14
SYNE1-228ENST00000490135 LONP2Q86WA8 852 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 MED10Q9BTT4 135 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 RANBP17Q9H2T7 1088 aaKnown RBP7.9□□□□□ -1.14
SYNE1-228ENST00000490135 GIMAP4Q9NUV9 329 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 C15orf41Q9Y2V0 281 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 ANGPTL3Q9Y5C1 460 aa7.9□□□□□ -1.14
SYNE1-228ENST00000490135 SASH3O75995 380 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 ATXN8OSP0DMR3 200 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 PLEKHM2Q8IWE5 1019 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 USHBP1Q8N6Y0 703 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 TTLL11Q8NHH1 800 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 STAMBPL1Q96FJ0 436 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 HINFPQ9BQA5 517 aa7.9□□□□□ -1.15
SYNE1-228ENST00000490135 LIN7AO14910 233 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CUTAO60888 179 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 KRT10P13645 584 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 C2orf54Q08AI8 447 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MMEL1Q495T6 779 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ZNF554Q86TJ5 538 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 EYA3Q99504 573 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 SLC13A4Q9UKG4 626 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANGPTL2Q9UKU9 493 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 STK24Q9Y6E0 443 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 GNGT2O14610 69 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MCF2LO15068 1137 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ABL1P00519 1130 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CD19P15391 556 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CDC25CP30307 473 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 STX17P56962 302 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ITGB3BPQ13352 177 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 RCN2Q14257 317 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 PDZD4Q76G19 769 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 NLRP7Q8WX94 980 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 BRF1Q92994 677 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 NOC4LQ9BVI4 516 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC87Q9NVE4 849 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CDHR2Q9BYE9 1310 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ATICP31939 592 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CCZ1BP86790 482 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CCZ1P86791 482 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 KRT71Q3SY84 523 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 RSBN1LQ6PCB5 846 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 KIAA2013Q8IYS2 634 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 PHC3Q8NDX5 983 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MGARPQ8TDB4 240 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 BHMTQ93088 406 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CEP19Q96LK0 163 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 PARP3Q9Y6F1 533 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MYOM3Q5VTT5 1437 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 GOLGA8QA0A0J9YX86 632 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 GOLGA8OA6NCC3 632 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 GOLGA8NF8WBI6 632 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 LCA5LO95447 670 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 GUCY1A3Q02108 690 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 NUGGCQ68CJ6 796 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 THOC7Q6I9Y2 204 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 NCAPH2Q6IBW4 605 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 CTAGE3PQ8IX95 158 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 FAM186BQ8IYM0 893 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 RBM41Q96IZ5 413 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 HIC2Q96JB3 615 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MOV10L1Q9BXT6 1211 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ZNF408Q9H9D4 720 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 RTEL1Q9NZ71 1219 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MAP3K2Q9Y2U5 619 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MSH2P43246 934 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 PDE6CP51160 858 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 MTTPP55157 894 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD20A4Q4UJ75 823 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD20A8PQ5CZ79 823 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD20A2Q5SQ80 823 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD20A1Q5TYW2 823 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 HAUS3Q68CZ6 603 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 TMTC1Q8IUR5 882 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 AFAP1Q8N556 730 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 WDR60Q8WVS4 1066 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 RSAD2Q8WXG1 361 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 NLRP3Q96P20 1036 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 SLC12A5Q9H2X9 1139 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 DDX20Q9UHI6 824 aaKnown RBP7.89□□□□□ -1.15
SYNE1-228ENST00000490135 ANAPC5Q9UJX4 755 aa7.89□□□□□ -1.15
SYNE1-228ENST00000490135 HMGB3O15347 200 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 PSMC1P62191 440 aaKnown RBP7.88□□□□□ -1.15
SYNE1-228ENST00000490135 KRT81Q14533 505 aa7.88□□□□□ -1.15
SYNE1-228ENST00000490135 BEND6Q5SZJ8 279 aaPredicted RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms