RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 TRIM5Q9C035 493 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 DNAJC25Q9H1X3 360 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 SPTLC3Q9NUV7 552 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 MCM9Q9NXL9 1143 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 IMPACTQ9P2X3 320 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 JAG2Q9Y219 1238 aa9.67□□□□□ -0.86
VTI1A-207ENST00000489357 SRPRBQ9Y5M8 271 aaKnown RBP9.67□□□□□ -0.86
VTI1A-207ENST00000489357 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.67□□□□□ -0.86
VTI1A-207ENST00000489357 ASTN2O75129 1339 aaPredicted RBP9.66□□□□□ -0.86
VTI1A-207ENST00000489357 A0A1B0GVL5 298 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 BTBD18B2RXH4 712 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 WDHD1O75717 1129 aaPredicted RBP9.66□□□□□ -0.86
VTI1A-207ENST00000489357 RXRAP19793 462 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 USP5P45974 858 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 NBPF9Q3BBW0 867 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 CCDC144CPQ8IYA2 1237 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 OGFOD1Q8N543 542 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 PRMT6Q96LA8 375 aaPredicted RBP9.66□□□□□ -0.86
VTI1A-207ENST00000489357 ZDHHC15Q96MV8 337 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 AIFM3Q96NN9 605 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 ZKSCAN3Q9BRR0 538 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 INCENPQ9NQS7 918 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 DACH1Q9UI36 760 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 HDAC9Q9UKV0 1011 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 PCDHAC2Q9Y5I4 1007 aa9.66□□□□□ -0.86
VTI1A-207ENST00000489357 CEP350Q5VT06 3117 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 PLIN4Q96Q06 1357 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 CNTNAP5Q8WYK1 1306 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 TRIM75PA6NK02 468 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 hCG_1984214I3L0E3 225 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 SCG2P13521 617 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 GSDMDP57764 484 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 PKN1Q16512 942 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 PFKFB3Q16875 520 aaPredicted RBP9.65□□□□□ -0.86
VTI1A-207ENST00000489357 CFAP100Q494V2 611 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 NT5DC1Q5TFE4 455 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 APOBEC3HQ6NTF7 200 aaKnown RBP9.65□□□□□ -0.86
VTI1A-207ENST00000489357 SHC4Q6S5L8 630 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 KRBA2Q6ZNG9 492 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 RAB11FIP4Q86YS3 637 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 ZNF713Q8N859 430 aaPredicted RBP9.65□□□□□ -0.86
VTI1A-207ENST00000489357 CCDC148Q8NFR7 591 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 KAT14Q9H8E8 782 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 FBXO2Q9UK22 296 aaPredicted RBP9.65□□□□□ -0.86
VTI1A-207ENST00000489357 KCNH3Q9ULD8 1083 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 TTF2Q9UNY4 1162 aaKnown RBP9.65□□□□□ -0.86
VTI1A-207ENST00000489357 CDK5RAP2Q96SN8 1893 aa9.65□□□□□ -0.86
VTI1A-207ENST00000489357 LAD1O00515 517 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 CRKP46108 304 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 NOVP48745 357 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 TOB1P50616 345 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 FMR1Q06787 632 aaKnown RBP eCLIP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 ORC2Q13416 577 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 GRM4Q14833 912 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 CST9Q5W186 159 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 ARL6IP4Q66PJ3 421 aaKnown RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 RCSD1Q6JBY9 416 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 C11orf57Q6ZUT1 292 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 C16orf86Q6ZW13 317 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 DHX40Q8IX18 779 aaKnown RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 ZNF444Q8N0Y2 327 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 DAGLBQ8NCG7 672 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 KIAA1524Q8TCG1 905 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 CCDC12Q8WUD4 166 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-207ENST00000489357 TNFRSF25Q93038 417 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 PRIMPOLQ96LW4 560 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 MKNK2Q9HBH9 465 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 GJB4Q9NTQ9 266 aa9.64□□□□□ -0.87
VTI1A-207ENST00000489357 F8W031 263 aaPredicted RBP9.63□□□□□ -0.87
VTI1A-207ENST00000489357 TRAF5O00463 557 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 AP5Z1O43299 807 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 HOXA2O43364 376 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 NRDCO43847 1150 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 PPFIA3O75145 1194 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 TSPY3P0CV98 308 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 TSPY8P0CW00 308 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 MARCKSP29966 332 aaPredicted RBP9.63□□□□□ -0.87
VTI1A-207ENST00000489357 GUCY1A2P33402 732 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 KCNJ6P48051 423 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 TFAP4Q01664 338 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 DLGAP5Q15398 846 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 TMEM132AQ24JP5 1023 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 ANGEL2Q5VTE6 544 aaKnown RBP9.63□□□□□ -0.87
VTI1A-207ENST00000489357 FKBP1CQ5VVH2 108 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 STK11IPQ8N1F8 1099 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 MLKLQ8NB16 471 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 PNMA1Q8ND90 353 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 CNNM3Q8NE01 707 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 NEDD1Q8NHV4 660 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 SH3RF3Q8TEJ3 882 aaPredicted RBP9.63□□□□□ -0.87
VTI1A-207ENST00000489357 KLRG1Q96E93 195 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 SPZ1Q9BXG8 430 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 KCND1Q9NSA2 647 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 CLIP2Q9UDT6 1046 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 SWAP70Q9UH65 585 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 DAGLAQ9Y4D2 1042 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 PCDHB3Q9Y5E6 796 aa9.63□□□□□ -0.87
VTI1A-207ENST00000489357 V9GY48 417 aaPredicted RBP9.63□□□□□ -0.87
VTI1A-207ENST00000489357 CYP2D7A0A087X1C5 515 aa9.62□□□□□ -0.87
VTI1A-207ENST00000489357 MOXD2PA6NHM9 499 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms