RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CTNND1O60716 968 aaKnown RBP13.84□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF165P49910 485 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 NAPAP54920 295 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 CCDC144BQ3MJ40 725 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 USP50Q70EL3 339 aaPredicted RBP13.84□□□□□ -0.19
HDAC6-230ENST00000488543 MTMR8Q96EF0 704 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 SEC63Q9UGP8 760 aaKnown RBP13.84□□□□□ -0.19
HDAC6-230ENST00000488543 TMX2Q9Y320 296 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 RIOK3O14730 519 aaKnown RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 BMP15O95972 392 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ATP2C1P98194 919 aaPredicted RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 FMR1Q06787 632 aaKnown RBP eCLIP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 GPATCH4Q5T3I0 446 aaKnown RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 DCAF4Q8WV16 495 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 KLRG1Q96E93 195 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ZNF341Q9BYN7 854 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 CSRNP2Q9H175 543 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ARHGEF10LQ9HCE6 1279 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 KCNH3Q9ULD8 1083 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 PITPNM2Q9BZ72 1349 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ESYT2A0FGR8 921 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 PPP1R11O60927 126 aaPredicted RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 USP2O75604 605 aaPredicted RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ZNF75DP51815 510 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 DCAF15Q66K64 600 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 MOB2Q70IA6 237 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 C4orf32Q8N8J7 132 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 GMCL1P1Q8NEA9 526 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 C16orf45Q96MC5 204 aaPredicted RBP13.83□□□□□ -0.2
HDAC6-230ENST00000488543 ZNF112Q9UJU3 913 aa13.83□□□□□ -0.2
HDAC6-230ENST00000488543 SMCO2A6NFE2 343 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 TMEM232C9JQI7 657 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 hCG_1984214I3L0E3 225 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 SUPT20HL1Q3ZLR7 823 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 USP49Q70CQ1 688 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 ZNF713Q8N859 430 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-230ENST00000488543 CCDC12Q8WUD4 166 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-230ENST00000488543 RRAGCQ9HB90 399 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 ZC3H4Q9UPT8 1303 aaKnown RBP13.82□□□□□ -0.2
HDAC6-230ENST00000488543 ATAD5Q96QE3 1844 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 BRD2P25440 801 aaKnown RBP13.82□□□□□ -0.2
HDAC6-230ENST00000488543 PTGDRQ13258 359 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 STX1AQ16623 288 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 LONRF3Q496Y0 759 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 FAM83BQ5T0W9 1011 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 ZNF526Q8TF50 670 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-230ENST00000488543 COA7Q96BR5 231 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 KIAA1468Q9P260 1216 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 CLEC11AQ9Y240 323 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 PPP2R3BQ9Y5P8 575 aa13.82□□□□□ -0.2
HDAC6-230ENST00000488543 PNMA6FA0A0J9YX94 578 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 CCDC194A0A1B0GVG4 234 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 IQCA1LA6NCM1 817 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 BMP3P12645 472 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 IL17AQ16552 155 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 MAP1SQ66K74 1059 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-230ENST00000488543 FERMT2Q96AC1 680 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 GMCL1Q96IK5 515 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 C6orf50Q9HD87 102 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 MCM7P33993 719 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 SPP2Q13103 211 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 IKQ13123 557 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-230ENST00000488543 KRBA2Q6ZNG9 492 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 SCYL3Q8IZE3 742 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 FEZ1Q99689 392 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 VCPKMTQ9H867 229 aa13.81□□□□□ -0.2
HDAC6-230ENST00000488543 TAL1P17542 331 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 PTPRAP18433 802 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 INF2Q27J81 1249 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 KRT25Q7Z3Z0 450 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 PLA2G4DQ86XP0 818 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 ZC3H15Q8WU90 426 aaKnown RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 CACTINQ8WUQ7 758 aaKnown RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 PRIMPOLQ96LW4 560 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 FBXO28Q9NVF7 368 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 ZHX2Q9Y6X8 837 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 TRAF5O00463 557 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 GNA11P29992 359 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 MTMR2Q13614 643 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 NAA30Q147X3 362 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 PPP1R18Q6NYC8 613 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 ELOA2Q8IYF1 753 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-230ENST00000488543 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.8□□□□□ -0.28e-10■■□□□ 12.3
HDAC6-230ENST00000488543 CDCA5Q96FF9 252 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 GOPCQ9HD26 462 aa13.8□□□□□ -0.2
HDAC6-230ENST00000488543 A0A087X0B3 334 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 GOLGA6L6A8MZA4 724 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 ZBTB5O15062 677 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 IQCB1Q15051 598 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 HOOK2Q96ED9 719 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 EPSTI1Q96J88 318 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 ANO10Q9NW15 660 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 TMEM260Q9NX78 707 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 TUBE1Q9UJT0 475 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 SYNPO2Q9UMS6 1093 aa13.79□□□□□ -0.2
HDAC6-230ENST00000488543 POLR2DO15514 142 aaKnown RBP13.79□□□□□ -0.2
HDAC6-230ENST00000488543 ACTN4O43707 911 aaKnown RBP13.79□□□□□ -0.2
HDAC6-230ENST00000488543 CAVIN2O95810 425 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms