RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CCAR1Q8IX12 1150 aaKnown RBP11.95□□□□□ -0.5
SKA1-204ENST00000488454 STAG2Q8N3U4 1231 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 ATG4CQ96DT6 458 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 PAGR1Q9BTK6 254 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 WBP1LQ9NX94 342 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 RABGAP1Q9Y3P9 1069 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 PHIPQ8WWQ0 1821 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 PPP1R3GB7ZBB8 358 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 VWA5AO00534 786 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 COL9A1P20849 921 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 MLLT3P42568 568 aaPredicted RBP11.94□□□□□ -0.5
SKA1-204ENST00000488454 CCNA1P78396 465 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 AKAP17AQ02040 695 aaKnown RBP11.94□□□□□ -0.5
SKA1-204ENST00000488454 LBX2Q6XYB7 198 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 ADGRF4Q8IZF3 695 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 CCDC82Q8N4S0 544 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 ANKRD13CQ8N6S4 541 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 JMYQ8N9B5 988 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 GPRC5AQ8NFJ5 357 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 SH2B1Q9NRF2 756 aaPredicted RBP11.94□□□□□ -0.5
SKA1-204ENST00000488454 SEC63Q9UGP8 760 aaKnown RBP11.94□□□□□ -0.5
SKA1-204ENST00000488454 CPA4Q9UI42 421 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 PNMA2Q9UL42 364 aa11.94□□□□□ -0.5
SKA1-204ENST00000488454 PFKFB2O60825 505 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CDKL5O76039 1030 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 ADD1P35611 737 aaKnown RBP11.93□□□□□ -0.5
SKA1-204ENST00000488454 SLC4A3P48751 1232 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 TRAF1Q13077 416 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CCDC174Q6PII3 467 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 TMTC3Q6ZXV5 915 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CPXCR1Q8N123 301 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 RRP36Q96EU6 259 aaKnown RBP11.93□□□□□ -0.5
SKA1-204ENST00000488454 ZBED2Q9BTP6 218 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 SPZ1Q9BXG8 430 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CFHR5Q9BXR6 569 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 SLC4A5Q9BY07 1137 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CPVLQ9H3G5 476 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 SLC38A10Q9HBR0 1119 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 CWC22Q9HCG8 908 aaKnown RBP11.93□□□□□ -0.5
SKA1-204ENST00000488454 RBPJLQ9UBG7 517 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 ADAMTS5Q9UNA0 930 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 HPS5Q9UPZ3 1129 aa11.93□□□□□ -0.5
SKA1-204ENST00000488454 MYH4Q9Y623 1939 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 MAP3K7O43318 606 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 PLEKHA8P1O95397 391 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 CDC27P30260 824 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 STAT3P40763 770 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 OAZ1P54368 228 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 SNAP25P60880 206 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 ERVK-9P63128 1117 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 ERVK-24P63145 666 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 KIF22Q14807 665 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 TMEM132BQ14DG7 1078 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 ME3Q16798 604 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 FAM110CQ1W6H9 321 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 C17orf99Q6UX52 265 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 HOMER1Q86YM7 354 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 TRIM22Q8IYM9 498 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 CMTR1Q8N1G2 835 aaKnown RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 SRBD1Q8N5C6 995 aaKnown RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 PIBF1Q8WXW3 757 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 RANBP17Q9H2T7 1088 aaKnown RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 RIOX1Q9H6W3 641 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 JMJD4Q9H9V9 463 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 NCOA5Q9HCD5 579 aaKnown RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 RAVER2Q9HCJ3 691 aaKnown RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 FAM217BQ9NTX9 383 aaPredicted RBP11.92□□□□□ -0.5
SKA1-204ENST00000488454 BTBD7Q9P203 1132 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 VPS9D1Q9Y2B5 631 aa11.92□□□□□ -0.5
SKA1-204ENST00000488454 GPR25O00155 361 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 ZBTB5O15062 677 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 SLC25A27O95847 323 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 COPB2P35606 906 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 SP3Q02447 781 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 SSRP1Q08945 709 aaKnown RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 SCRN1Q12765 414 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 ARHGEF6Q15052 776 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 CDC37Q16543 378 aaPredicted RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 TSR1Q2NL82 804 aaKnown RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 SNRNP48Q6IEG0 339 aaKnown RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 NBPF11Q86T75 865 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 NECAB1Q8N987 351 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 TEX13BQ9BXU2 312 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 SPATC1LQ9H0A9 340 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 TXNRD2Q9NNW7 524 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 RBM27Q9P2N5 1060 aaKnown RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 MORF4L1Q9UBU8 362 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 CCPG1Q9ULG6 757 aa11.91□□□□□ -0.5
SKA1-204ENST00000488454 V9GY48 417 aaPredicted RBP11.91□□□□□ -0.5
SKA1-204ENST00000488454 PNMA6FA0A0J9YX94 578 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 ATP2A1O14983 1001 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 HRO43593 1189 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 CYTH3O43739 400 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 CNMDO75829 334 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 ICAM1P05362 532 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 BCRP11274 1271 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 IFNAR1P17181 557 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 QRICH1Q2TAL8 776 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 Q3C1V9 767 aa11.9□□□□□ -0.5
SKA1-204ENST00000488454 TKFCQ3LXA3 575 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms