RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 ZCCHC17Q9NP64 241 aaKnown RBP12.12□□□□□ -0.47
HLA-DMB-261ENST00000487996 CCPG1Q9ULG6 757 aa12.12□□□□□ -0.47
HLA-DMB-261ENST00000487996 KCNJ14Q9UNX9 436 aa12.12□□□□□ -0.47
HLA-DMB-261ENST00000487996 ZDHHC9Q9Y397 364 aa12.12□□□□□ -0.47
HLA-DMB-261ENST00000487996 RLFQ13129 1914 aa12.12□□□□□ -0.47
HLA-DMB-261ENST00000487996 SPDYE16A6NNV3 312 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 PPP1R11O60927 126 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 SREBF2Q12772 1141 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 MOGSQ13724 837 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 USH1GQ495M9 461 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 FOXD4L5Q5VV16 416 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 FERMT3Q86UX7 667 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 NOSTRINQ8IVI9 506 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 REXO1Q8N1G1 1221 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 SAMD3Q8N6K7 520 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 FOXD4L4Q8WXT5 416 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 TNPO1Q92973 898 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 COA7Q96BR5 231 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 TEX13BQ9BXU2 312 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 MAF1Q9H063 256 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 ASCC2Q9H1I8 757 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 PSTPIP2Q9H939 334 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 RIC8AQ9NPQ8 531 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 CREBZFQ9NS37 354 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 GJB4Q9NTQ9 266 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 TESPA1A2RU30 521 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 COPB2P35606 906 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 HERVK_113P62684 666 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 MKRN3Q13064 507 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 RESTQ13127 1097 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 TKFCQ3LXA3 575 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 GPAT2Q6NUI2 795 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 TYW1BQ6NUM6 668 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 MCF2L2Q86YR7 1114 aa12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 PARK7Q99497 189 aaKnown RBP12.11□□□□□ -0.47
HLA-DMB-261ENST00000487996 BTBD18B2RXH4 712 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 GOLGA6L22H0YM25 854 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 SNAP25P60880 206 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 CSPP1Q1MSJ5 1256 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 CLEC17AQ6ZS10 378 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 KRT25Q7Z3Z0 450 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 CPXCR1Q8N123 301 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 SMCR8Q8TEV9 937 aaPredicted RBP12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 BRI3BPQ8WY22 251 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 ZNF396Q96N95 335 aaPredicted RBP12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 MAP3K20Q9NYL2 800 aaKnown RBP12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 CFAP45Q9UL16 551 aa12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 NOL7Q9UMY1 257 aaKnown RBP12.1□□□□□ -0.47
HLA-DMB-261ENST00000487996 CCDC194A0A1B0GVG4 234 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 BTBD19C9JJ37 291 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 PDHXO00330 501 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 FOSP01100 380 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 GCLCP48506 637 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 TRAPPC10P48553 1259 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 KRT85P78386 507 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 AP3B2Q13367 1082 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 NPY5RQ15761 445 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 RILPL1Q5EBL4 403 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 PAXIP1Q6ZW49 1069 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 P2RX7Q99572 595 aaKnown RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 RAVER2Q9HCJ3 691 aaKnown RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 ZNF214Q9UL59 606 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 RABGAP1Q9Y3P9 1069 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 ZNF536O15090 1300 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 A0A0G2JMZ2 1700 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 COL11A1P12107 1806 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 PCNTO95613 3336 aa12.09□□□□□ -0.47
HLA-DMB-261ENST00000487996 RASSF10A6NK89 507 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 PIK3CDO00329 1044 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 ALAS1P13196 640 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 PRKAR2AP13861 404 aaKnown RBP12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 STAT3P40763 770 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 NOGQ13253 232 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 MYSM1Q5VVJ2 828 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 SNRNP48Q6IEG0 339 aaKnown RBP12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 REPS2Q8NFH8 660 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 SHISA4Q96DD7 197 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 AGBL1Q96MI9 1066 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 FBXO40Q9UH90 709 aa12.08□□□□□ -0.47
HLA-DMB-261ENST00000487996 KIF28PB7ZC32 967 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 GCOM1H8Y6P7 765 aaPredicted RBP12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 SLC25A27O95847 323 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 POLR2MP0CAP2 368 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 CCNA1P78396 465 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 NR5A1Q13285 461 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 PLS1Q14651 629 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 TMEM132BQ14DG7 1078 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 NONOQ15233 471 aaKnown RBP eCLIP12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 DEFB115Q30KQ5 88 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 COL13A1Q5TAT6 717 aaPredicted RBP12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 CHST13Q8NET6 341 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 OXER1Q8TDS5 423 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 TRERF1Q96PN7 1200 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 SCAND2PQ9GZW5 306 aaPredicted RBP12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 EHMT1Q9H9B1 1298 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 MYH15Q9Y2K3 1946 aa12.08□□□□□ -0.48
HLA-DMB-261ENST00000487996 SPDYE3A6NKU9 549 aa12.07□□□□□ -0.48
HLA-DMB-261ENST00000487996 SPDYE4A6NLX3 237 aa12.07□□□□□ -0.48
HLA-DMB-261ENST00000487996 FAM155AB1AL88 458 aaPredicted RBP12.07□□□□□ -0.48
HLA-DMB-261ENST00000487996 M0R2N6 131 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms