RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 KRBA2Q6ZNG9 492 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 RNF214Q8ND24 703 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 SYMPKQ92797 1274 aaKnown RBP10.74□□□□□ -0.69
SF3B1-211ENST00000487698 KLRG1Q96E93 195 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 WRNIP1Q96S55 665 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 SDF4Q9BRK5 362 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 WDR18Q9BV38 432 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 FEM1BQ9UK73 627 aa10.74□□□□□ -0.69
SF3B1-211ENST00000487698 VWA3AA6NCI4 1184 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 MEIS2O14770 477 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 LETM2Q2VYF4 491 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 LONRF3Q496Y0 759 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 NOL9Q5SY16 702 aaKnown RBP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 SASS6Q6UVJ0 657 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 TEX2Q8IWB9 1127 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 ZKSCAN4Q969J2 545 aaPredicted RBP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 EPSTI1Q96J88 318 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 KIAA1468Q9P260 1216 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 COL11A1P12107 1806 aaPredicted RBP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 A0A087X0B3 334 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 CCNT1O60563 726 aaKnown RBP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 PTPRAP18433 802 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 LONP1P36776 959 aaKnown RBP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 SUPT20HL1Q3ZLR7 823 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.73□□□□□ -0.69
SF3B1-211ENST00000487698 FBXO28Q9NVF7 368 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 FZD1Q9UP38 647 aa10.73□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L15C9J2P7 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L13C9JLJ4 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L11C9JVI0 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L18D6R9N7 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L22D6RA61 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L17D6RBQ6 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L19D6RCP7 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L20D6RJB6 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 POLR2DO15514 142 aaKnown RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 ACTN4O43707 911 aaKnown RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 NEMFO60524 1076 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 MDM2Q00987 491 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L24Q0WX57 530 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 TRAF1Q13077 416 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 AP3B2Q13367 1082 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 MTMR2Q13614 643 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 STX1AQ16623 288 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 UVSSAQ2YD98 709 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USH1GQ495M9 461 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 ANO6Q4KMQ2 910 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 DPY19L2Q6NUT2 758 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP17L6PQ6QN14 398 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 FAM200AQ8TCP9 573 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 CRYGNQ8WXF5 182 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 ERCC4Q92889 916 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 KIFC2Q96AC6 838 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 P2RX7Q99572 595 aaKnown RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 EMILIN3Q9NT22 766 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 TUBE1Q9UJT0 475 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 LOC285556D6RIA3 1793 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 PIK3CDO00329 1044 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 CAVIN2O95810 425 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 OR52Z1P0C646 297 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 TAL1P17542 331 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 VCAM1P19320 739 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP14P54578 494 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 DGKZQ13574 1117 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 GPR162Q16538 588 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 MCTP2Q6DN12 878 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 PPP4R3AQ6IN85 833 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 USP50Q70EL3 339 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 ZNF280CQ8ND82 737 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 CNNM3Q8NE01 707 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 DCPSQ96C86 337 aaKnown RBP10.72□□□□□ -0.69
SF3B1-211ENST00000487698 C12orf42Q96LP6 360 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 AS3MTQ9HBK9 375 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 PICK1Q9NRD5 415 aa10.72□□□□□ -0.69
SF3B1-211ENST00000487698 GLTPD2A6NH11 291 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 ADM5C9JUS6 153 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 SLC37A4O43826 429 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 USP2O75604 605 aaPredicted RBP10.71□□□□□ -0.69
SF3B1-211ENST00000487698 TDP2O95551 362 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 BACE1P56817 501 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 SPP2Q13103 211 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 E2F4Q16254 413 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 DTHD1Q6ZMT9 781 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 SULF1Q8IWU6 871 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 PDILTQ8N807 584 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 MTMR9Q96QG7 549 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 SLF1Q9BQI6 1058 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 ANO3Q9BYT9 981 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 SERTAD1Q9UHV2 236 aa10.71□□□□□ -0.69
SF3B1-211ENST00000487698 ZNF536O15090 1300 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 GRIN3BO60391 1043 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 GCFC2P16383 781 aaKnown RBP10.7□□□□□ -0.7
SF3B1-211ENST00000487698 EPHX2P34913 555 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 PNOCQ13519 176 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 DLK2Q6UY11 383 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 C11orf57Q6ZUT1 292 aaPredicted RBP10.7□□□□□ -0.7
SF3B1-211ENST00000487698 SH3RF1Q7Z6J0 888 aa10.7□□□□□ -0.7
SF3B1-211ENST00000487698 PRPF38AQ8NAV1 312 aaKnown RBP10.7□□□□□ -0.7
SF3B1-211ENST00000487698 ZC3H15Q8WU90 426 aaKnown RBP10.7□□□□□ -0.7
SF3B1-211ENST00000487698 DNAJC25Q9H1X3 360 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms