RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 COG6Q9Y2V7 657 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 FGBP02675 491 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 CCL23P55773 120 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 ITGA7Q13683 1181 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 FSCN1Q16658 493 aaKnown RBP18.34■□□□□ 0.53
MCF2L-228ENST00000487354 AGBL1Q96MI9 1066 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 ACAD9Q9H845 621 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 PDGFCQ9NRA1 345 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 TET1Q8NFU7 2136 aa18.34■□□□□ 0.53
MCF2L-228ENST00000487354 M0R2C6 588 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 BMP1P13497 986 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 PSMC6P62333 389 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 SLFN13Q68D06 897 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 TAPT1Q6NXT6 567 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 RASGRP2Q7LDG7 609 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 KBTBD3Q8NAB2 608 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 SLC28A3Q9HAS3 691 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 RNF146Q9NTX7 359 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 DDX19BQ9UMR2 479 aa18.33■□□□□ 0.52
MCF2L-228ENST00000487354 GPAA1O43292 621 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 CABYRO75952 493 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 TTLL1O95922 423 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 BMP3P12645 472 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 TFF2Q03403 129 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 FBXO16Q8IX29 292 aaPredicted RBP18.32■□□□□ 0.52
MCF2L-228ENST00000487354 APPBP2Q92624 585 aa18.32■□□□□ 0.52
MCF2L-228ENST00000487354 TMEM232C9JQI7 657 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 PLA2G5P39877 138 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 MUM1L1Q5H9M0 696 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 TSHZ3Q63HK5 1081 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 NEDD1Q8NHV4 660 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 SCLYQ96I15 445 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 PURBQ96QR8 312 aaKnown RBP18.31■□□□□ 0.52
MCF2L-228ENST00000487354 LRRCC1Q9C099 1032 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 MTIF3Q9H2K0 278 aaKnown RBP18.31■□□□□ 0.52
MCF2L-228ENST00000487354 CTDP1Q9Y5B0 961 aaPredicted RBP18.31■□□□□ 0.52
MCF2L-228ENST00000487354 PCDHA11Q9Y5I1 949 aa18.31■□□□□ 0.52
MCF2L-228ENST00000487354 EPOPA6NHQ4 379 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 ASB14A6NK59 587 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 TTLL4Q14679 1199 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 PPP2R2DQ66LE6 453 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 MORC4Q8TE76 937 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 GMCL1Q96IK5 515 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 ALDH8A1Q9H2A2 487 aaPredicted RBP18.3■□□□□ 0.52
MCF2L-228ENST00000487354 ECHDC1Q9NTX5 307 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 CYP39A1Q9NYL5 469 aa18.3■□□□□ 0.52
MCF2L-228ENST00000487354 RNF113AO15541 343 aaKnown RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 DYNC1LI2O43237 492 aaPredicted RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 ARHGEF15O94989 841 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 FDX1P10109 184 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 KCNQ1P51787 676 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 STAT2P52630 851 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 SNAP25P60880 206 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 NOL8Q76FK4 1167 aaKnown RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 ZNF444Q8N0Y2 327 aaPredicted RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 STAG1Q8WVM7 1258 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 TRERF1Q96PN7 1200 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 TRMT13Q9NUP7 481 aaKnown RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 Q9Y3F1 56 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 SLC4A7Q9Y6M7 1214 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 TRIP12Q14669 1992 aaPredicted RBP18.29■□□□□ 0.52
MCF2L-228ENST00000487354 BRWD1Q9NSI6 2320 aa18.29■□□□□ 0.52
MCF2L-228ENST00000487354 RFXAPO00287 272 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 FOXP2O15409 715 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 PLA2G6O60733 806 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 POU3F3P20264 500 aaPredicted RBP18.28■□□□□ 0.52
MCF2L-228ENST00000487354 TDO2P48775 406 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 TKFCQ3LXA3 575 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 EEPD1Q7L9B9 569 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 IFNL3Q8IZI9 196 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 CHMP4CQ96CF2 233 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 SEZ6LQ9BYH1 1024 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 MTCH2Q9Y6C9 303 aa18.28■□□□□ 0.52
MCF2L-228ENST00000487354 MS4A1P11836 297 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 ALAS1P13196 640 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 ATP2A2P16615 1042 aaKnown RBP18.27■□□□□ 0.52
MCF2L-228ENST00000487354 IQSEC1Q6DN90 963 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 FAM160B2Q86V87 743 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 MICALL1Q8N3F8 863 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 SEC62Q99442 399 aaKnown RBP18.27■□□□□ 0.52
MCF2L-228ENST00000487354 AP5M1Q9H0R1 490 aa18.27■□□□□ 0.52
MCF2L-228ENST00000487354 ERC2O15083 957 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 CA3P07451 260 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 TSPY3P0CV98 308 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 TSPY8P0CW00 308 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 CYP2C9P11712 490 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 GNAT2P19087 354 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 MCCP23508 829 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 PURAQ00577 322 aaKnown RBP18.26■□□□□ 0.51
MCF2L-228ENST00000487354 TFAP4Q01664 338 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 KRT40Q6A162 431 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 KCTD1Q719H9 257 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 VTA1Q9NP79 307 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 IL17RBQ9NRM6 502 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 PRR12Q9ULL5 1215 aa18.26■□□□□ 0.51
MCF2L-228ENST00000487354 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.26■□□□□ 0.51
MCF2L-228ENST00000487354 PATL2C9JE40 543 aaKnown RBP18.25■□□□□ 0.51
MCF2L-228ENST00000487354 NMT2O60551 498 aa18.25■□□□□ 0.51
MCF2L-228ENST00000487354 SLC1A4P43007 532 aa18.25■□□□□ 0.51
MCF2L-228ENST00000487354 DUSP28Q4G0W2 176 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms