RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 GPKOWQ92917 476 aaPredicted RBP eCLIP13.63□□□□□ -0.23
COL3A1-206ENST00000487010 SECISBP2LQ93073 1101 aaKnown RBP13.63□□□□□ -0.23
COL3A1-206ENST00000487010 P2RX5Q93086 422 aa13.63□□□□□ -0.23
COL3A1-206ENST00000487010 PLEKHA4Q9H4M7 779 aa13.63□□□□□ -0.23
COL3A1-206ENST00000487010 DCP1AQ9NPI6 582 aaPredicted RBP13.63□□□□□ -0.23
COL3A1-206ENST00000487010 NUTM2BA6NNL0 878 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 NUTM2EB1AL46 878 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 MIIPQ5JXC2 388 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ANKRD40Q6AI12 368 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CCDC70Q6NSX1 233 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ZNF572Q7Z3I7 529 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CREG2Q8IUH2 290 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 FAM114A1Q8IWE2 563 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 AMOTL1Q8IY63 956 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 LRRC15Q8TF66 581 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CNOT6LQ96LI5 555 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 PCMTD1Q96MG8 357 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ERGIC2Q96RQ1 377 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 FAM184BQ9ULE4 1060 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 SNX12Q9UMY4 172 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 PCDHA6Q9UN73 950 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 PCDHA8Q9Y5H6 950 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 MYH1P12882 1939 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 TSPY2A6NKD2 308 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ZNF263O14978 683 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CYP2D6P10635 497 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 MTIF2P46199 727 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 SPA17Q15506 151 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 DNAJC21Q5F1R6 531 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 TYW1BQ6NUM6 668 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ZSCAN29Q8IWY8 852 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 FAM76AQ8TAV0 307 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 NSUN4Q96CB9 384 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 FAM84BQ96KN1 310 aaPredicted RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 NOC4LQ9BVI4 516 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CRNKL1Q9BZJ0 848 aaKnown RBP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CUEDC2Q9H467 287 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 MAGEF1Q9HAY2 307 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 ATP8A2Q9NTI2 1148 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 CCDC87Q9NVE4 849 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 LRWD1Q9UFC0 647 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 NIP7Q9Y221 180 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL3A1-206ENST00000487010 JRKLQ9Y4A0 524 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 SCN7AQ01118 1682 aa13.62□□□□□ -0.23
COL3A1-206ENST00000487010 GOLGA6BA6NDN3 693 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 LAD1O00515 517 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 PRPHP41219 470 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 ITIH3Q06033 890 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 INF2Q27J81 1249 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 TTC31Q49AM3 519 aaPredicted RBP13.61□□□□□ -0.23
COL3A1-206ENST00000487010 SBK1Q52WX2 424 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 ANKRD18AQ8IVF6 992 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 DAGLBQ8NCG7 672 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 TRIM58Q8NG06 486 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 PPM1EQ8WY54 764 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 RUBCNQ92622 972 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 CCDC47Q96A33 483 aaKnown RBP13.61□□□□□ -0.23
COL3A1-206ENST00000487010 EEF2KMTQ96G04 330 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 CCDC42Q96M95 316 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 KAT14Q9H8E8 782 aa13.61□□□□□ -0.23
COL3A1-206ENST00000487010 GOLGA6CA6NDK9 693 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 EXOC5O00471 708 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 USO1O60763 962 aaKnown RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 TACC1O75410 805 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 GOLGA6DP0CG33 693 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PRLRP16471 622 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 HNRNPH3P31942 346 aaKnown RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 HSPA2P54652 639 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 MECOMQ03112 1051 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PDE4DQ08499 809 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PACS2Q86VP3 889 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 STAG2Q8N3U4 1231 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 IPO4Q8TEX9 1081 aaKnown RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 IQCDQ96DY2 449 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 GOLGA6AQ9NYA3 693 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 ARPP21Q9UBL0 812 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 KIAA1551Q9HCM1 1747 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 FLT1P17948 1338 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 ANKRD65E5RJM6 399 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PLCG1P19174 1290 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PPP1R2P41236 205 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 CRKLP46109 303 aaKnown RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 STK4Q13043 487 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 CCDC96Q2M329 555 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 FKBP15Q5T1M5 1219 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 GALNT17Q6IS24 598 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 TMED8Q6PL24 325 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 KRT26Q7Z3Y9 468 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 CABP7Q86V35 215 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 SMCR8Q8TEV9 937 aaPredicted RBP13.6□□□□□ -0.23
COL3A1-206ENST00000487010 C7orf25Q9BPX7 421 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 TRIM9Q9C026 710 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 SH2D4AQ9H788 454 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 PCDHA13Q9Y5I0 950 aa13.6□□□□□ -0.23
COL3A1-206ENST00000487010 ADAMTS2O95450 1211 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 PLEKP08567 350 aaPredicted RBP13.59□□□□□ -0.23
COL3A1-206ENST00000487010 IRAK1P51617 712 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 PPFIA1Q13136 1202 aa13.59□□□□□ -0.23
COL3A1-206ENST00000487010 EZH2Q15910 746 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms