RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 RGS22Q8NE09 1264 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 TBC1D32Q96NH3 1257 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 HTATIP2Q9BUP3 242 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 RNF208Q9H0X6 261 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 GLT8D2Q9H1C3 349 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 RIOX1Q9H6W3 641 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 ACAD9Q9H845 621 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 RAVER2Q9HCJ3 691 aaKnown RBP9.57□□□□□ -0.88
SF3A1-208ENST00000485618 TXNRD2Q9NNW7 524 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 ZNF214Q9UL59 606 aaPredicted RBP9.57□□□□□ -0.88
SF3A1-208ENST00000485618 LIMCH1Q9UPQ0 1083 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 GJB1P08034 283 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 ALAS1P13196 640 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 PTPREP23469 700 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 PDIA3P30101 505 aaKnown RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 GJA8P48165 433 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 IRF5Q13568 498 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 TMTC3Q6ZXV5 915 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 CCDC144CPQ8IYA2 1237 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 STAG2Q8N3U4 1231 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 SLAIN1Q8ND83 568 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 CCDC12Q8WUD4 166 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 WASF1Q92558 559 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 CUL5Q93034 780 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 TRERF1Q96PN7 1200 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 MYL10Q9BUA6 226 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 JMJD4Q9H9V9 463 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 SENP2Q9HC62 589 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 GPHNQ9NQX3 736 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 SH2B1Q9NRF2 756 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 MAP3K20Q9NYL2 800 aaKnown RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 DIS3Q9Y2L1 958 aaKnown RBP9.56□□□□□ -0.88
SF3A1-208ENST00000485618 PCDHA1Q9Y5I3 950 aa9.56□□□□□ -0.88
SF3A1-208ENST00000485618 hCG_1984214I3L0E3 225 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 CNMDO75829 334 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 FARP2O94887 1054 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 XBP1P17861 261 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 SSRP1Q08945 709 aaKnown RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 MAP2K5Q13163 448 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 HOMER1Q86YM7 354 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 FAM177A1Q8N128 213 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 MSL3Q8N5Y2 521 aaKnown RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 ZNF713Q8N859 430 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 REPS2Q8NFH8 660 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 PXYLP1Q8TE99 480 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 U2AF1L4Q8WU68 220 aaKnown RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 AGBL1Q96MI9 1066 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 PORCNQ9H237 461 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 HOMER2Q9NSB8 354 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 RNF146Q9NTX7 359 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 ADD3Q9UEY8 706 aaKnown RBP9.55□□□□□ -0.88
SF3A1-208ENST00000485618 BRPF3Q9ULD4 1205 aa9.55□□□□□ -0.88
SF3A1-208ENST00000485618 MGAMO43451 1857 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 LOC102724159A0A0B4J2E5 919 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 POTEB2H3BUK9 544 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 CAPN2P17655 700 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 RXRAP19793 462 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 ADORA2AP29274 412 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 FLT3LGP49771 235 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 AK2P54819 239 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 TOB2Q14106 344 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-208ENST00000485618 GRB14Q14449 540 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 PWP2Q15269 919 aaKnown RBP9.54□□□□□ -0.88
SF3A1-208ENST00000485618 QRICH1Q2TAL8 776 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 USH1GQ495M9 461 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 MFSD14CQ5VZR4 134 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 MCTP2Q6DN12 878 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 RNF207Q6ZRF8 634 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.54□□□□□ -0.88
SF3A1-208ENST00000485618 UBE2Q1Q7Z7E8 422 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 CCDC82Q8N4S0 544 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 SRBD1Q8N5C6 995 aaKnown RBP9.54□□□□□ -0.88
SF3A1-208ENST00000485618 SLC17A8Q8NDX2 589 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 MTMR8Q96EF0 704 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 APBA2Q99767 749 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 UNC93B1Q9H1C4 597 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 GABRQQ9UN88 632 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 KIF3AQ9Y496 699 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 NR2E3Q9Y5X4 410 aa9.54□□□□□ -0.88
SF3A1-208ENST00000485618 V9GY48 417 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-208ENST00000485618 SZT2Q5T011 3432 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 PTPDC1A2A3K4 754 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 ASB14A6NK59 587 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 GCOM1H8Y6P7 765 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-208ENST00000485618 PRPF3O43395 683 aaKnown RBP9.53□□□□□ -0.88
SF3A1-208ENST00000485618 ADCY3O60266 1144 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 PFKFB2O60825 505 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 INHAP05111 366 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 HOXC6P09630 235 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 POLR2MP0CAP2 368 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 ELNP15502 786 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 IFNAR1P17181 557 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 CYP2B6P20813 491 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 ADD1P35611 737 aaKnown RBP9.53□□□□□ -0.88
SF3A1-208ENST00000485618 SNAP25P60880 206 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 CCT2P78371 535 aaKnown RBP9.53□□□□□ -0.88
SF3A1-208ENST00000485618 STK3Q13188 491 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 MORN1Q5T089 497 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 PPP1R18Q6NYC8 613 aa9.53□□□□□ -0.88
SF3A1-208ENST00000485618 NSMFQ6X4W1 530 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms