RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 CDK7P50613 346 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 BEX3Q00994 111 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 VPS53Q5VIR6 699 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 ARMCX2Q7L311 632 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 ZNF467Q7Z7K2 595 aaPredicted RBP11.79□□□□□ -0.52
CPSF4-213ENST00000484112 NEDD1Q8NHV4 660 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 CHMP4CQ96CF2 233 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 ABHD16BQ9H3Z7 469 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 HOMER2Q9NSB8 354 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 NYAP2Q9P242 653 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 MSRAQ9UJ68 235 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 GREB1LQ9C091 1923 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-213ENST00000484112 PRDM1O75626 825 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 TSPY3P0CV98 308 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 TSPY8P0CW00 308 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 COL9A1P20849 921 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 CST5P28325 142 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-213ENST00000484112 GJA9P57773 515 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 PSRC1Q6PGN9 363 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-213ENST00000484112 FAM126BQ8IXS8 530 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 CCDC144CPQ8IYA2 1237 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 LRRC47Q8N1G4 583 aaKnown RBP11.78□□□□□ -0.52
CPSF4-213ENST00000484112 MKL1Q969V6 931 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 FBXO40Q9UH90 709 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 FEM1BQ9UK73 627 aa11.78□□□□□ -0.52
CPSF4-213ENST00000484112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.78□□□□□ -0.52
CPSF4-213ENST00000484112 IGKV6D-41A0A0C4DH26 115 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.77□□□□□ -0.53
CPSF4-213ENST00000484112 ZNF213O14771 459 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 ATP2A1O14983 1001 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 FGBP02675 491 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 CNTN2Q02246 1040 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 TNFAIP2Q03169 654 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 IMMTQ16891 758 aaKnown RBP11.77□□□□□ -0.53
CPSF4-213ENST00000484112 CASC1Q6TDU7 716 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 CXCL17Q6UXB2 119 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 CHST13Q8NET6 341 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 STAG1Q8WVM7 1258 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 FGD4Q96M96 766 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 UPF3AQ9H1J1 476 aaKnown RBP11.77□□□□□ -0.53
CPSF4-213ENST00000484112 NKX2-4Q9H2Z4 354 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 SLC38A10Q9HBR0 1119 aa11.77□□□□□ -0.53
CPSF4-213ENST00000484112 DNAH12Q6ZR08 3092 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 SGSM2O43147 1006 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 TTLL1O95922 423 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 BMP3P12645 472 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 CCL23P55773 120 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 TFAP4Q01664 338 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 IKQ13123 557 aaPredicted RBP11.76□□□□□ -0.53
CPSF4-213ENST00000484112 ADGRE1Q14246 886 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 RAB30Q15771 203 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 CCDC178Q5BJE1 867 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 AKNAD1Q5T1N1 836 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 RASIP1Q5U651 963 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 SLFN13Q68D06 897 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 MFSD6Q6ZSS7 791 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 OTOP2Q7RTS6 562 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 IL27Q8NEV9 243 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 ATXN2LQ8WWM7 1075 aaKnown RBP11.76□□□□□ -0.53
CPSF4-213ENST00000484112 CEP95Q96GE4 821 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 ASB2Q96Q27 587 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 MTIF3Q9H2K0 278 aaKnown RBP11.76□□□□□ -0.53
CPSF4-213ENST00000484112 SLC28A3Q9HAS3 691 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 IL23AQ9NPF7 189 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 TCP11L1Q9NUJ3 509 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 MTMR4Q9NYA4 1195 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 CXXC1Q9P0U4 656 aaPredicted RBP11.76□□□□□ -0.53
CPSF4-213ENST00000484112 THEGQ9P2T0 379 aa11.76□□□□□ -0.53
CPSF4-213ENST00000484112 TSPY2A6NKD2 308 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 TMEM232C9JQI7 657 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 CTAGE5O15320 804 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 DYNC1LI2O43237 492 aaPredicted RBP11.75□□□□□ -0.53
CPSF4-213ENST00000484112 CD4P01730 458 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 PTGS1P23219 599 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 NOVP48745 357 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 KIAA1211Q6ZU35 1233 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 EEPD1Q7L9B9 569 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 MICALL1Q8N3F8 863 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 GMCL1P1Q8NEA9 526 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 ADAMTS19Q8TE59 1207 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 HERVK_113Q902F9 699 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 AGBL1Q96MI9 1066 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 TTC14Q96N46 770 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 KATNBL1Q9H079 304 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 AP5M1Q9H0R1 490 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 HIPK3Q9H422 1215 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 ACAD9Q9H845 621 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 CNNM2Q9H8M5 875 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 RAPGEFL1Q9UHV5 662 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 DDX49Q9Y6V7 483 aaKnown RBP11.75□□□□□ -0.53
CPSF4-213ENST00000484112 U3KPZ7 1027 aaPredicted RBP11.75□□□□□ -0.53
CPSF4-213ENST00000484112 UMODL1Q5DID0 1318 aa11.75□□□□□ -0.53
CPSF4-213ENST00000484112 LAMA4Q16363 1823 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 SOWAHBA6NEL2 793 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ASB14A6NK59 587 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ZEB2O60315 1214 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ALAS1P13196 640 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 RABGGTBP53611 331 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 OAZ1P54368 228 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms