RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 RASAL3Q86YV0 1011 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 TMEM87AQ8NBN3 555 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 ZNF784Q8NCA9 323 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 RASGRP4Q8TDF6 673 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 CCDC12Q8WUD4 166 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 USP28Q96RU2 1077 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 P2RX7Q99572 595 aaKnown RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 C6orf50Q9HD87 102 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 RIC8AQ9NPQ8 531 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 ZNF214Q9UL59 606 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 CNPY2Q9Y2B0 182 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 PCDHA1Q9Y5I3 950 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 ATP6V1DQ9Y5K8 247 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 TLL2Q9Y6L7 1015 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 TESPA1A2RU30 521 aaPredicted RBP9.46□□□□□ -0.9
USP4-210ENST00000483212 WNT7AO00755 349 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 MEIS2O14770 477 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 ATP2A1O14983 1001 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 EDIL3O43854 480 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 GNA11P29992 359 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 ADCY7P51828 1080 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 OAZ1P54368 228 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 TMEM132BQ14DG7 1078 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 NFKBIBQ15653 356 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 USH1GQ495M9 461 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 ATL3Q6DD88 541 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 FASTKD5Q7L8L6 764 aaKnown RBP9.46□□□□□ -0.9
USP4-210ENST00000483212 CLEC4DQ8WXI8 215 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 BRI3BPQ8WY22 251 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 AGBL1Q96MI9 1066 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 GBP4Q96PP9 640 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 FTOQ9C0B1 505 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP4-210ENST00000483212 TMEM260Q9NX78 707 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 ABCB11O95342 1321 aa9.46□□□□□ -0.9
USP4-210ENST00000483212 FAM155AB1AL88 458 aaPredicted RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 PIK3CDO00329 1044 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 CNMDO75829 334 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 SLC10A3P09131 477 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 CETPP11597 493 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 YY1P25490 414 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 NASPP49321 788 aaPredicted RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 GTF2A2P52657 109 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 KRT85P78386 507 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 FSTL1Q12841 308 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 TRAF1Q13077 416 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 PTPAQ15257 358 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 UBE2SQ16763 222 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 RGMBQ6NW40 437 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 TEX2Q8IWB9 1127 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 PTPN18Q99952 460 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 ASCC2Q9H1I8 757 aaPredicted RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 PSTPIP2Q9H939 334 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 GDPD2Q9HCC8 539 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 RAVER2Q9HCJ3 691 aaKnown RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 BRMS1Q9HCU9 246 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 HOXC10Q9NYD6 342 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 RTEL1Q9NZ71 1219 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 TFIP11Q9UBB9 837 aaKnown RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 SLC45A1Q9Y2W3 748 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 CLIC4Q9Y696 253 aa9.45□□□□□ -0.9
USP4-210ENST00000483212 COL11A1P12107 1806 aaPredicted RBP9.45□□□□□ -0.9
USP4-210ENST00000483212 CCL15-CCL14A0A0B4J2E2 113 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 TMEM88BA6NKF7 163 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 BTBD19C9JJ37 291 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 ZBED4O75132 1171 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 YEATS4O95619 227 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 TRAPPC10P48553 1259 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 MRPL12P52815 198 aaKnown RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 HERVK_113P62684 666 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 MKRN3Q13064 507 aaKnown RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 NBR1Q14596 966 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 CCL15Q16663 113 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 RILPL1Q5EBL4 403 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 USP17L6PQ6QN14 398 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 PIK3AP1Q6ZUJ8 805 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 KRT25Q7Z3Z0 450 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 ANKRD23Q86SG2 305 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 REXO1Q8N1G1 1221 aaKnown RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 FAM43AQ8N2R8 423 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 LINC00301Q8NCQ3 95 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 BICD2Q8TD16 824 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 LEO1Q8WVC0 666 aaPredicted RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 CRYGNQ8WXF5 182 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 TBC1D5Q92609 795 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 CUL5Q93034 780 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 HHIPL1Q96JK4 782 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 ZNF396Q96N95 335 aaPredicted RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 GLT8D2Q9H1C3 349 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 LMBRD1Q9NUN5 540 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 POLR3EQ9NVU0 708 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 BTBD7Q9P203 1132 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 BIN2Q9UBW5 565 aaPredicted RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 RCOR1Q9UKL0 485 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 PNMA2Q9UL42 364 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 CCPG1Q9ULG6 757 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 RIPK3Q9Y572 518 aa9.44□□□□□ -0.9
USP4-210ENST00000483212 MORC2Q9Y6X9 1032 aaPredicted RBP9.44□□□□□ -0.9
USP4-210ENST00000483212 ELP1O95163 1332 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms