RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 KIRREL3Q8IZU9 778 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 NACAP1Q9BZK3 213 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 FAM207AQ9NSI2 230 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 BCCIPQ9P287 314 aaKnown RBP eCLIP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 KDM7AQ6ZMT4 941 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 TMTC2Q8N394 836 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 NOC4LQ9BVI4 516 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 SRGNP10124 158 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 TCP1P17987 556 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 IL17AQ16552 155 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 KCTD19Q17RG1 926 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 IFT20Q8IY31 132 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 THEMISQ8N1K5 641 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 GREM2Q9H772 168 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 TCRBV5S4A2TA0A5A2 114 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 PP2D1A8MPX8 630 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 NLRP5P59047 1200 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 PPP2R5AQ15172 486 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 LCORLQ8N3X6 602 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 SH2D4AQ9H788 454 aa20.86■□□□□ 0.93
CCDC88B-207ENST00000479965 RASSF10A6NK89 507 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 SMTNP53814 917 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 MAP3K12Q12852 859 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 PURBQ96QR8 312 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 MDH1P40925 334 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 SF3A3Q12874 501 aaKnown RBP eCLIP20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 TTLL11Q8NHH1 800 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 NOC3LQ8WTT2 800 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 CAVIN3Q969G5 261 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 BAZ2BQ9UIF8 2168 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 ARFGEF2Q9Y6D5 1785 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 ECM29Q5VYK3 1845 aa20.85■□□□□ 0.93
CCDC88B-207ENST00000479965 TRADDQ15628 312 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 CNOT6LQ96LI5 555 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 NUP58Q9BVL2 599 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 A1CFQ9NQ94 594 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 MCM8Q9UJA3 840 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 SPEF2Q9C093 1822 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 MYO5AQ9Y4I1 1855 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 NKRFO15226 690 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 EIF4A3P38919 411 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 KIF11P52732 1056 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 HLTFQ14527 1009 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 RIPOR2Q9Y4F9 1068 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 GOLGA6L10A6NI86 522 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 NEBLO76041 1014 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 RPSAP08865 295 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 ODF2Q5BJF6 829 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 ZNF662Q6ZS27 426 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 THAP9Q9H5L6 903 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 MMRN2Q9H8L6 949 aa20.84■□□□□ 0.93
CCDC88B-207ENST00000479965 ARHGAP23Q9P227 1491 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 ALX1Q15699 326 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 SNCBQ16143 134 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 PREPLQ4J6C6 727 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 IQCKQ8N0W5 287 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 TTYH3Q9C0H2 523 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 HAUS2Q9NVX0 235 aa20.83■□□□□ 0.93
CCDC88B-207ENST00000479965 MAGEA1P43355 309 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 RASSF7Q02833 373 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 PAK2Q13177 524 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 TMC4Q7Z404 712 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 SDR42E1Q8WUS8 393 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 STAG1Q8WVM7 1258 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 KRT12Q99456 494 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 SLC24A3Q9HC58 644 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 ARHGAP20Q9P2F6 1191 aa20.83■□□□□ 0.92
CCDC88B-207ENST00000479965 FAM107AO95990 144 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 CHRNA2Q15822 529 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 CCDC178Q5BJE1 867 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 MIEF2Q96C03 454 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 ATP6V1G3Q96LB4 118 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 SALL4Q9UJQ4 1053 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 IFIT1BQ5T764 474 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 OR2W6PQ8NHA6 318 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 CYFIP2Q96F07 1278 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 PLAAQ9Y263 795 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 ATXN2Q99700 1313 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 RASSF9O75901 435 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 CFAP221Q4G0U5 840 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 CATIPQ7Z7H3 387 aa20.82■□□□□ 0.92
CCDC88B-207ENST00000479965 PCCAP05165 728 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 PAX7P23759 505 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 CLNS1AP54105 237 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 SPRED3Q2MJR0 410 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 CYB5D1Q6P9G0 228 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 YTHDF3Q7Z739 585 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 PARP9Q8IXQ6 854 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 SPATA5Q8NB90 893 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 FBXO3Q9UK99 471 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 ABCC12Q96J65 1359 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 ADAMTS3O15072 1205 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 RRAGAQ7L523 313 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 KLHL7Q8IXQ5 586 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 ZNF622Q969S3 477 aaKnown RBP eCLIP20.81■□□□□ 0.927e-8■■■□□ 17.1
CCDC88B-207ENST00000479965 DDX20Q9UHI6 824 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 MYH10P35580 1976 aa20.81■□□□□ 0.92
CCDC88B-207ENST00000479965 SOS2Q07890 1332 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 ANKRD18BA2A2Z9 1011 aa20.8■□□□□ 0.92
CCDC88B-207ENST00000479965 TMOD1P28289 359 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms