RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CCDC84Q86UT8 332 aaPredicted RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 LSM14BQ9BX40 385 aaKnown RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 PIH1D3Q9NQM4 214 aaKnown RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 PACSIN2Q9UNF0 486 aaPredicted RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 ZNF652Q9Y2D9 606 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 TCHHQ07283 1943 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 KRT14P02533 472 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 GYG1P46976 350 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 ZBTB16Q05516 673 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 MUM1L1Q5H9M0 696 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 AP1M1Q9BXS5 423 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 UTP11Q9Y3A2 253 aaKnown RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 MST1RQ04912 1400 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 TBCAO75347 108 aaKnown RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 PLEKHA8P1O95397 391 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 LACTBP83111 547 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 TFAP4Q01664 338 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 ASIC2Q16515 512 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 LRRC1Q9BTT6 524 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 NOVA2Q9UNW9 492 aaKnown RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 ADGRB1O14514 1584 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 PP2D1A8MPX8 630 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 ZRSR2Q15696 482 aaKnown RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 ZKSCAN8Q15776 578 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 MB21D2Q8IYB1 491 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 CRACR2BQ8N4Y2 399 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 LPIN2Q92539 896 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 ATP8A1Q9Y2Q0 1164 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 SOS2Q07890 1332 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 UBN2Q6ZU65 1347 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 SEC24CP53992 1094 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 CACNB1Q02641 598 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 KRT27Q7Z3Y8 459 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 VSIG1Q86XK7 387 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 EHD4Q9H223 541 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 KANSL2Q9H9L4 492 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 PRM3Q9NNZ6 103 aa14.93□□□□□ -0.02
USP42-206ENST00000479544 RBM28Q9NW13 759 aaKnown RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 BIN2Q9UBW5 565 aaPredicted RBP14.93□□□□□ -0.02
USP42-206ENST00000479544 MYO1FO00160 1098 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 PRCPP42785 496 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 LRRC31Q6UY01 552 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 NCAPGQ9BPX3 1015 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 ZNF287Q9HBT7 754 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 GPCPD1Q9NPB8 672 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 EHD2Q9NZN4 543 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 CTNND1O60716 968 aaKnown RBP14.92□□□□□ -0.02
USP42-206ENST00000479544 MCAMP43121 646 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 GNAQP50148 359 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 TCIRG1Q13488 830 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 RDH13Q8NBN7 331 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 NEDD4P46934 1319 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 ADD2P35612 726 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 NEDD9Q14511 834 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 LCORLQ8N3X6 602 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 MARCH10Q8NA82 808 aaPredicted RBP14.92□□□□□ -0.02
USP42-206ENST00000479544 LMBR1Q8WVP7 490 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 L1RE1Q9UN81 338 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 CEP83Q9Y592 693 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 A6NNZ2 444 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 TUBB8Q3ZCM7 444 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 LRCH2Q5VUJ6 765 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 USPL1Q5W0Q7 1092 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 BLIDQ8IZY5 108 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 ZSCAN10Q96SZ4 725 aaPredicted RBP14.92□□□□□ -0.02
USP42-206ENST00000479544 ADAMTS1Q9UHI8 967 aa14.92□□□□□ -0.02
USP42-206ENST00000479544 IRAK1P51617 712 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 TBC1D1Q86TI0 1168 aaPredicted RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 SEPT12Q8IYM1 358 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 MB21D1Q8N884 522 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 TBC1D5Q92609 795 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 STIM2Q9P246 746 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 MTRF1LQ9UGC7 380 aaKnown RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 RGS16O15492 202 aaPredicted RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 CALCOCO2Q13137 446 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 TMC4Q7Z404 712 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 PACS2Q86VP3 889 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 FOXP4Q8IVH2 680 aaPredicted RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 U2AF1L4Q8WU68 220 aaKnown RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
USP42-206ENST00000479544 RASAL2Q9UJF2 1139 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 TUBE1Q9UJT0 475 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 PCDHB13Q9Y5F0 798 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 NWD1Q149M9 1564 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 SCG2P13521 617 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 KIRREL3Q8IZU9 778 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 KAZALD1Q96I82 304 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 PCDH11XQ9BZA7 1347 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 PCDH11YQ9BZA8 1340 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 NRXN1Q9ULB1 1477 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 AXIN2Q9Y2T1 843 aa14.91□□□□□ -0.02
USP42-206ENST00000479544 MED23Q9ULK4 1368 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 KIF11P52732 1056 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 SESN3P58005 492 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 PLCB3Q01970 1234 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 DUSP10Q9Y6W6 482 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 ZRANB2O95218 330 aaKnown RBP eCLIP14.9□□□□□ -0.02
USP42-206ENST00000479544 GYPCP04921 128 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 GNA11P29992 359 aa14.9□□□□□ -0.02
USP42-206ENST00000479544 DYNLL1P63167 89 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms