RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 GPATCH4Q5T3I0 446 aaKnown RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 REXO1Q8N1G1 1221 aaKnown RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 GIMAP8Q8ND71 665 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 TEKT1Q969V4 418 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 PIGSQ96S52 555 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 C7orf25Q9BPX7 421 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 TTF2Q9UNY4 1162 aaKnown RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 SLU7O95391 586 aaKnown RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 CHRNA5P30532 468 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 ZNF543Q08ER8 600 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 MTMR9Q96QG7 549 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 CCDC94Q9BW85 323 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 SRRTQ9BXP5 876 aaKnown RBP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 BLZF1Q9H2G9 400 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 PPP2R2CQ9Y2T4 447 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTPRF-212ENST00000477970 SLC26A4O43511 780 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 HLA-DOAP06340 250 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 AKR1B1P15121 316 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 APOBEC3HQ6NTF7 200 aaKnown RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CDC42EP5Q6NZY7 148 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CNNM4Q6P4Q7 775 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CNGA4Q8IV77 575 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 TTLL6Q8N841 843 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 ANKRD20A12PQ8NF67 263 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 NELFBQ8WX92 580 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CNKSR1Q969H4 720 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 THAP9Q9H5L6 903 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 USP40Q9NVE5 1235 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CGNQ9P2M7 1197 aaKnown RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 LTBP3Q9NS15 1303 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 PNMA6FA0A0J9YX94 578 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CLK2P49760 499 aaKnown RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 DHTKD1Q96HY7 919 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 TMX4Q9H1E5 349 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 DHX36Q9H2U1 1008 aaKnown RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 RIC8AQ9NPQ8 531 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 EEF1GP26641 437 aaKnown RBP13.75□□□□□ -0.21
PTPRF-212ENST00000477970 ADCY7P51828 1080 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 TCP11X2Q5H9J9 407 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 CABP7Q86V35 215 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 ZNF592Q92610 1267 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 MKL1Q969V6 931 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 IDI2Q9BXS1 227 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 GLT8D2Q9H1C3 349 aa13.75□□□□□ -0.21
PTPRF-212ENST00000477970 MFAP3LO75121 409 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 PRCPP42785 496 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 STIM1Q13586 685 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 PDIA5Q14554 519 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 KRT31Q15323 416 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 PPP4R3AQ6IN85 833 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 KLHL10Q6JEL2 608 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 SMYD4Q8IYR2 804 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-212ENST00000477970 TSC1Q92574 1164 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 NAP1L4Q99733 375 aaKnown RBP13.74□□□□□ -0.21
PTPRF-212ENST00000477970 RIMBP2O15034 1052 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 TEX33O43247 280 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 CCNT1O60563 726 aaKnown RBP13.74□□□□□ -0.21
PTPRF-212ENST00000477970 KMT5BQ4FZB7 885 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 STRIP1Q5VSL9 837 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 FOXR2Q6PJQ5 311 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 PPFIBP1Q86W92 1011 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 PDCL2Q8N4E4 241 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 TBCKQ8TEA7 893 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 STK17AQ9UEE5 414 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 COPB1P53618 953 aaKnown RBP13.74□□□□□ -0.21
PTPRF-212ENST00000477970 STX17P56962 302 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 AMPD3Q01432 767 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 SYT10Q6XYQ8 523 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 RASGRP2Q7LDG7 609 aa13.74□□□□□ -0.21
PTPRF-212ENST00000477970 A0A1W2PQC6 194 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 GRIPAP1Q4V328 841 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 CCDC47Q96A33 483 aaKnown RBP13.73□□□□□ -0.21
PTPRF-212ENST00000477970 KCNJ18B7U540 433 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 PICALMQ13492 652 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 KCNJ12Q14500 433 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 LETM2Q2VYF4 491 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 STAMQ92783 540 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 JMJD4Q9H9V9 463 aa13.73□□□□□ -0.21
PTPRF-212ENST00000477970 ZC3H4Q9UPT8 1303 aaKnown RBP13.73□□□□□ -0.21
PTPRF-212ENST00000477970 PLCG1P19174 1290 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 CRKP46108 304 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 RBL2Q08999 1139 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 HSP90AA4PQ58FG1 418 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 DCAF4Q8WV16 495 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 C7orf43Q8WVR3 580 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 MMTAG2Q9BU76 263 aaKnown RBP13.72□□□□□ -0.21
PTPRF-212ENST00000477970 TRIM9Q9C026 710 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 ZNF215Q9UL58 517 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-212ENST00000477970 SYNPO2Q9UMS6 1093 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 PSMA7O14818 248 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 TPM1P09493 284 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 ADKP55263 362 aaKnown RBP13.72□□□□□ -0.21
PTPRF-212ENST00000477970 HOMER1Q86YM7 354 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 TEX2Q8IWB9 1127 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 LRRC15Q8TF66 581 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 NYAP2Q9P242 653 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 DNAI1Q9UI46 699 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 BCS1LQ9Y276 419 aa13.72□□□□□ -0.21
PTPRF-212ENST00000477970 GDAQ9Y2T3 454 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms