RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 B4E1Z4 1266 aa21.84■■□□□ 1.09
COL7A1-209ENST00000474432 LRIT3Q3SXY7 679 aa21.84■■□□□ 1.09
COL7A1-209ENST00000474432 SH3RF1Q7Z6J0 888 aa21.84■■□□□ 1.09
COL7A1-209ENST00000474432 TSEN34Q9BSV6 310 aaKnown RBP21.84■■□□□ 1.09
COL7A1-209ENST00000474432 UPF3AQ9H1J1 476 aaKnown RBP21.84■■□□□ 1.09
COL7A1-209ENST00000474432 PDLIM7Q9NR12 457 aa21.84■■□□□ 1.09
COL7A1-209ENST00000474432 ZSWIM5Q9P217 1185 aa21.84■■□□□ 1.09
COL7A1-209ENST00000474432 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-209ENST00000474432 TRIM43BA6NCK2 446 aa21.83■■□□□ 1.09
COL7A1-209ENST00000474432 CST5P28325 142 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-209ENST00000474432 ACLYP53396 1101 aa21.83■■□□□ 1.09
COL7A1-209ENST00000474432 TLE2Q04725 743 aa21.83■■□□□ 1.09
COL7A1-209ENST00000474432 CLEC4DQ8WXI8 215 aa21.83■■□□□ 1.09
COL7A1-209ENST00000474432 TRIM43Q96BQ3 446 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-209ENST00000474432 NFIBO00712 420 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 NT5C2P49902 561 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 GJA9P57773 515 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 NKX3-2P78367 333 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 KCNA10Q16322 511 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 MORC4Q8TE76 937 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 CPVLQ9H3G5 476 aa21.82■■□□□ 1.08
COL7A1-209ENST00000474432 GOLGA8HP0CJ92 632 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 PTGS1P23219 599 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 ITGB8P26012 769 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 CHMLP26374 656 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 IMMTQ16891 758 aaKnown RBP21.81■■□□□ 1.08
COL7A1-209ENST00000474432 TMEM63BQ5T3F8 832 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 TAPT1Q6NXT6 567 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 NSMFQ6X4W1 530 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 ENAHQ8N8S7 591 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-209ENST00000474432 ZSCAN10Q96SZ4 725 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-209ENST00000474432 CTNNA3Q9UI47 895 aa21.81■■□□□ 1.08
COL7A1-209ENST00000474432 ASB14A6NK59 587 aa21.8■■□□□ 1.08
COL7A1-209ENST00000474432 PTH1RQ03431 593 aa21.8■■□□□ 1.08
COL7A1-209ENST00000474432 BAATQ14032 418 aaPredicted RBP21.8■■□□□ 1.08
COL7A1-209ENST00000474432 PNMA1Q8ND90 353 aa21.8■■□□□ 1.08
COL7A1-209ENST00000474432 PDGFCQ9NRA1 345 aa21.8■■□□□ 1.08
COL7A1-209ENST00000474432 GNEQ9Y223 722 aaKnown RBP21.8■■□□□ 1.08
COL7A1-209ENST00000474432 MOXD2PA6NHM9 499 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 IQCA1Q86XH1 822 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 UBA5Q9GZZ9 404 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 TNKSO95271 1327 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 WDR19Q8NEZ3 1342 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 RAD50Q92878 1312 aa21.79■■□□□ 1.08
COL7A1-209ENST00000474432 ASGR1P07306 291 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 C6orf222P0C671 652 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-209ENST00000474432 CDK7P50613 346 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 TNFAIP2Q03169 654 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 CCDC178Q5BJE1 867 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 GPATCH4Q5T3I0 446 aaKnown RBP21.78■■□□□ 1.08
COL7A1-209ENST00000474432 SLC30A10Q6XR72 485 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 CYB5R4Q7L1T6 521 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 ANKRD33Q7Z3H0 272 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 BADQ92934 168 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 LBHD1Q9BQE6 289 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-209ENST00000474432 PRDM5Q9NQX1 630 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-209ENST00000474432 TAF6LQ9Y6J9 622 aa21.78■■□□□ 1.08
COL7A1-209ENST00000474432 SMPD1P17405 629 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 FAAP100Q0VG06 881 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 SEC23AQ15436 765 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 FBXO16Q8IX29 292 aaPredicted RBP21.77■■□□□ 1.08
COL7A1-209ENST00000474432 KRT23Q9C075 422 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 STARD7Q9NQZ5 370 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 PRKAG2Q9UGJ0 569 aa21.77■■□□□ 1.08
COL7A1-209ENST00000474432 KIAA0355O15063 1070 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 CYP21A2P08686 494 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 CLTBP09497 229 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 ALDH5A1P51649 535 aaPredicted RBP21.76■■□□□ 1.07
COL7A1-209ENST00000474432 BEX3Q00994 111 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 GNASQ5JWF2 1037 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 GPR153Q6NV75 609 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 EEPD1Q7L9B9 569 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 NUP133Q8WUM0 1156 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 TOX2Q96NM4 488 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 KAT14Q9H8E8 782 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 ELP1O95163 1332 aa21.76■■□□□ 1.07
COL7A1-209ENST00000474432 SGSM2O43147 1006 aa21.75■■□□□ 1.07
COL7A1-209ENST00000474432 PQBP1O60828 265 aaKnown RBP21.75■■□□□ 1.07
COL7A1-209ENST00000474432 C9orf50Q5SZB4 431 aa21.75■■□□□ 1.07
COL7A1-209ENST00000474432 ADGRF4Q8IZF3 695 aa21.75■■□□□ 1.07
COL7A1-209ENST00000474432 PCSK9Q8NBP7 692 aaKnown RBP21.75■■□□□ 1.07
COL7A1-209ENST00000474432 CNNM2Q9H8M5 875 aa21.75■■□□□ 1.07
COL7A1-209ENST00000474432 MYH6P13533 1939 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 PTPDC1A2A3K4 754 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 RPS6P62753 249 aaKnown RBP21.74■■□□□ 1.07
COL7A1-209ENST00000474432 SHHQ15465 462 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 IQSEC1Q6DN90 963 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 RNF207Q6ZRF8 634 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 TBC1D5Q92609 795 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 SPC25Q9HBM1 224 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 VTA1Q9NP79 307 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 PNMA2Q9UL42 364 aa21.74■■□□□ 1.07
COL7A1-209ENST00000474432 LOC102724159A0A0B4J2E5 919 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 RBM47A0AV96 593 aaKnown RBP21.73■■□□□ 1.07
COL7A1-209ENST00000474432 EDNRBP24530 442 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 CALML3P27482 149 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 EPHB4P54760 987 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 PWP2Q15269 919 aaKnown RBP21.73■■□□□ 1.07
COL7A1-209ENST00000474432 CDC37Q16543 378 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-209ENST00000474432 ASPRV1Q53RT3 343 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms