RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CTDSPL2Q05D32 466 aa15.98■□□□□ 0.15
CHD3-209ENST00000473376 SMC5Q8IY18 1101 aa15.98■□□□□ 0.15
CHD3-209ENST00000473376 LENG1Q96BZ8 264 aaPredicted RBP15.98■□□□□ 0.15
CHD3-209ENST00000473376 RNPC3Q96LT9 517 aaKnown RBP15.98■□□□□ 0.15
CHD3-209ENST00000473376 VTA1Q9NP79 307 aa15.98■□□□□ 0.15
CHD3-209ENST00000473376 HOMER2Q9NSB8 354 aa15.98■□□□□ 0.15
CHD3-209ENST00000473376 ADD3Q9UEY8 706 aaKnown RBP15.98■□□□□ 0.15
CHD3-209ENST00000473376 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.97■□□□□ 0.15
CHD3-209ENST00000473376 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.97■□□□□ 0.15
CHD3-209ENST00000473376 ADCY6O43306 1168 aa15.97■□□□□ 0.15
CHD3-209ENST00000473376 ALAS1P13196 640 aa15.97■□□□□ 0.15
CHD3-209ENST00000473376 PPIGQ13427 754 aaKnown RBP eCLIP15.97■□□□□ 0.15
CHD3-209ENST00000473376 VPS53Q5VIR6 699 aa15.97■□□□□ 0.15
CHD3-209ENST00000473376 KCTD1Q719H9 257 aa15.97■□□□□ 0.15
CHD3-209ENST00000473376 FAM126BQ8IXS8 530 aa15.97■□□□□ 0.15
CHD3-209ENST00000473376 RNF41Q9H4P4 317 aaPredicted RBP15.97■□□□□ 0.15
CHD3-209ENST00000473376 LAMA2P24043 3122 aaKnown RBP15.97■□□□□ 0.15
CHD3-209ENST00000473376 MYADML2A6NDP7 307 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 NMT2O60551 498 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 CD4P01730 458 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 SNHG28P0DPA3 235 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 CCDC178Q5BJE1 867 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 TMEM199Q8N511 208 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 CRBNQ96SW2 442 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 TMEM47Q9BQJ4 181 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 AP5M1Q9H0R1 490 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 RWDD1Q9H446 243 aaPredicted RBP15.96■□□□□ 0.15
CHD3-209ENST00000473376 CCPG1Q9ULG6 757 aa15.96■□□□□ 0.15
CHD3-209ENST00000473376 WDR19Q8NEZ3 1342 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 EPHB4P54760 987 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 FSCN1Q16658 493 aaKnown RBP15.95■□□□□ 0.14
CHD3-209ENST00000473376 AKNAD1Q5T1N1 836 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 GPATCH4Q5T3I0 446 aaKnown RBP15.95■□□□□ 0.14
CHD3-209ENST00000473376 RASIP1Q5U651 963 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 SYDE2Q5VT97 1194 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 TAPT1Q6NXT6 567 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 MFSD6Q6ZSS7 791 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 TLK2Q86UE8 772 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 DGKHQ86XP1 1220 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 RGS22Q8NE09 1264 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 VTI1AQ96AJ9 217 aa15.95■□□□□ 0.14
CHD3-209ENST00000473376 MPHOSPH6Q99547 160 aaKnown RBP15.95■□□□□ 0.14
CHD3-209ENST00000473376 CDX2Q99626 313 aaPredicted RBP15.95■□□□□ 0.14
CHD3-209ENST00000473376 ISY1Q9ULR0 285 aaKnown RBP15.95■□□□□ 0.14
CHD3-209ENST00000473376 ASTN1O14525 1302 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 CCDC171Q6TFL3 1326 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 A0A0D9SFI3 127 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 RBM47A0AV96 593 aaKnown RBP15.94■□□□□ 0.14
CHD3-209ENST00000473376 B4DLN1 442 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 HIP1O00291 1037 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 PDHBP11177 359 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 MRPL12P52815 198 aaKnown RBP15.94■□□□□ 0.14
CHD3-209ENST00000473376 CCDC96Q2M329 555 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 DUSP28Q4G0W2 176 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 MUM1L1Q5H9M0 696 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 PSRC1Q6PGN9 363 aaPredicted RBP15.94■□□□□ 0.14
CHD3-209ENST00000473376 DNERQ8NFT8 737 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 FAM227BQ96M60 508 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 INCENPQ9NQS7 918 aa15.94■□□□□ 0.14
CHD3-209ENST00000473376 NKRFO15226 690 aaKnown RBP eCLIP15.93■□□□□ 0.14
CHD3-209ENST00000473376 SMPD1P17405 629 aa15.93■□□□□ 0.14
CHD3-209ENST00000473376 ZNF543Q08ER8 600 aa15.93■□□□□ 0.14
CHD3-209ENST00000473376 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.93■□□□□ 0.14
CHD3-209ENST00000473376 ANKS1AQ92625 1134 aa15.93■□□□□ 0.14
CHD3-209ENST00000473376 ESR2Q92731 530 aa15.93■□□□□ 0.14
CHD3-209ENST00000473376 TTYH1Q9H313 450 aaPredicted RBP15.93■□□□□ 0.14
CHD3-209ENST00000473376 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 SDSP20132 328 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 NMIQ13287 307 aaPredicted RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 ITGA7Q13683 1181 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 BAATQ14032 418 aaPredicted RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 NSMFQ6X4W1 530 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 NOL8Q76FK4 1167 aaKnown RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 ZNF589Q86UQ0 364 aaPredicted RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 CHD1LQ86WJ1 897 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 MTIF3Q9H2K0 278 aaKnown RBP15.92■□□□□ 0.14
CHD3-209ENST00000473376 TOMM22Q9NS69 142 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 POLR3EQ9NVU0 708 aa15.92■□□□□ 0.14
CHD3-209ENST00000473376 TRIM6-TRIM34B2RNG4 842 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 ZNF213O14771 459 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 DYNC1LI2O43237 492 aaPredicted RBP15.91■□□□□ 0.14
CHD3-209ENST00000473376 KPNA6O60684 536 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 EDNRBP24530 442 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 ALDH5A1P51649 535 aaPredicted RBP15.91■□□□□ 0.14
CHD3-209ENST00000473376 NUCB1Q02818 461 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 TMEM240Q5SV17 173 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 C16orf59Q7L2K0 433 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 IQCA1Q86XH1 822 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 HERVK_113Q902F9 699 aa15.91■□□□□ 0.14
CHD3-209ENST00000473376 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.91■□□□□ 0.142e-8■■■■■ 40.2
CHD3-209ENST00000473376 CUL9Q8IWT3 2517 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 SUPT20HL2P0C7V6 817 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 DNAJB2P25686 324 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 CPT1AP50416 773 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 BRDTQ58F21 947 aaPredicted RBP15.9■□□□□ 0.14
CHD3-209ENST00000473376 RRP12Q5JTH9 1297 aaKnown RBP15.9■□□□□ 0.14
CHD3-209ENST00000473376 TTBK2Q6IQ55 1244 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 CXCL17Q6UXB2 119 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 KIAA1211Q6ZU35 1233 aa15.9■□□□□ 0.14
CHD3-209ENST00000473376 PLEKHM2Q8IWE5 1019 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms