RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 BEND6Q5SZJ8 279 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 BEND3Q5T5X7 828 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 RGS9BPQ6ZS82 235 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 PITPNM3Q9BZ71 974 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 SERPINB8P50452 374 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 TCAIMQ8N3R3 496 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ALG1Q9BT22 464 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ATAD3AQ9NVI7 634 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 GGCXP38435 758 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 METAP2P50579 478 aaKnown RBP eCLIP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ZCWPW2Q504Y3 356 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 TCP11X2Q5H9J9 407 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 CYB5D1Q6P9G0 228 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 KSR1Q8IVT5 923 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 EVI5LQ96CN4 794 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ANKRD27Q96NW4 1050 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 UBE2OQ9C0C9 1292 aaKnown RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 IL1RAPL1Q9NZN1 696 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 SEC63Q9UGP8 760 aaKnown RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ARPC4-TTLL3A0A0A6YYG9 625 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 NUTM2BA6NNL0 878 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ZNF839A8K0R7 811 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 NUTM2EB1AL46 878 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 KCNK3O14649 394 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 WDR47O94967 919 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 CTTNQ14247 550 aaKnown RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 KRT81Q14533 505 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ALDH1L2Q3SY69 923 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 STKLD1Q8NE28 680 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ABHD8Q96I13 439 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 RNPEPQ9H4A4 650 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 RABL2AQ9UBK7 228 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 SYNRGQ9UMZ2 1314 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 GOLGA8MH3BSY2 632 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ZNF213O14771 459 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 DCTN2Q13561 401 aaKnown RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 NAA30Q147X3 362 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 CYTH1Q15438 398 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 RARS2Q5T160 578 aaKnown RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 TEDDM1Q5T9Z0 273 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 STAG2Q8N3U4 1231 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 SSH1Q8WYL5 1049 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 B3GALT6Q96L58 329 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 LRRC37BQ96QE4 947 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 TSPAN18Q96SJ8 248 aa9.78□□□□□ -0.84
COL6A3-210ENST00000473258 FHDC1Q9C0D6 1143 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 ZNF644Q9H582 1327 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-210ENST00000473258 S100A5P33763 92 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 COPB1P53618 953 aaKnown RBP9.77□□□□□ -0.84
COL6A3-210ENST00000473258 AK2P54819 239 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 OLR1P78380 273 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 PLIN5Q00G26 463 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 HP1BP3Q5SSJ5 553 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-210ENST00000473258 PATL1Q86TB9 770 aaKnown RBP9.77□□□□□ -0.84
COL6A3-210ENST00000473258 TMEM110Q86TL2 294 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 IQUBQ8NA54 791 aa9.77□□□□□ -0.84
COL6A3-210ENST00000473258 IFIT3O14879 490 aaKnown RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 GPC4O75487 556 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 C4BPBP20851 252 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 SMTNP53814 917 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 MRPS25P82663 173 aaKnown RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 LRRC8BQ6P9F7 803 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 CCSER2Q9H7U1 834 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 TRIM75PA6NK02 468 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 STRNO43815 780 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 ATP6V1G1O75348 118 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 RASSF9O75901 435 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 SEMA3DO95025 777 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 PRKAR2BP31323 418 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 USP5P45974 858 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 MTTPP55157 894 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 ASIC2Q16515 512 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC149Q6ZUS6 474 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 OGFOD1Q8N543 542 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 SLC26A6Q9BXS9 759 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 BOLA2Q9H3K6 86 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 IQSEC3Q9UPP2 1182 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 PTPRCP08575 1304 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 AP3B1O00203 1094 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 EIF2S1P05198 315 aaKnown RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 MDM2Q00987 491 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 CCDC85BQ15834 202 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 NLRP4Q96MN2 994 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 KRT12Q99456 494 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 AMFRQ9UKV5 643 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 DNALI1O14645 258 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 UBTFL6P0CB48 400 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 TNFAIP3P21580 790 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 MAN1A1P33908 653 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 METTL24Q5JXM2 366 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 BTNL9Q6UXG8 535 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 LUZP2Q86TE4 346 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 NGDNQ8NEJ9 315 aaKnown RBP9.77□□□□□ -0.85
COL6A3-210ENST00000473258 FAM161BQ96MY7 647 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 KLHL20Q9Y2M5 609 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 AFG3L2Q9Y4W6 797 aa9.77□□□□□ -0.85
COL6A3-210ENST00000473258 ZMYM3Q14202 1370 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 EIF3HO15372 352 aaKnown RBP eCLIP9.76□□□□□ -0.85
COL6A3-210ENST00000473258 PPP1R37O75864 691 aa9.76□□□□□ -0.85
COL6A3-210ENST00000473258 PRLP01236 227 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms