RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	C6orf222	P0C671	652 aa	Predicted RBP	5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	CD8B	P10966	210 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	SEPHS1	P49903	392 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	TRIM61	Q5EBN2	209 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	ANGEL2	Q5VTE6	544 aa	Known RBP	5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	E4F1	Q66K89	784 aa	Predicted RBP	5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	SPRED2	Q7Z698	418 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	FRS2	Q8WU20	508 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	AP5S1	Q9NUS5	200 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	NPFFR2	Q9Y5X5	522 aa		5.61	□□□□□ -1.51
PTCD3-209	ENST00000472044	TRBV23OR9-2	A0A075B6M9	112 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	PPP1R12A	O14974	1030 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	ECI1	P42126	302 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	KCNJ6	P48051	423 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	GABRE	P78334	506 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	NTRK3	Q16288	839 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	TKFC	Q3LXA3	575 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	IQCE	Q6IPM2	695 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	DENND5A	Q6IQ26	1287 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	RSPO2	Q6UXX9	243 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	CYP2R1	Q6VVX0	501 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	MAMDC2	Q7Z304	686 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	FCRL2	Q96LA5	508 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	MMP19	Q99542	508 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	PLAA	Q9Y263	795 aa		5.6	□□□□□ -1.51
PTCD3-209	ENST00000472044	EFCAB14	O75071	495 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	CD96	P40200	585 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	CEBPA	P49715	358 aa	Predicted RBP	5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	IKZF1	Q13422	519 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	PRSS53	Q2L4Q9	553 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	DALRD3	Q5D0E6	543 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	STYK1	Q6J9G0	422 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	NFXL1	Q6ZNB6	911 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	ZNF662	Q6ZS27	426 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	KSR1	Q8IVT5	923 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	TMEM52	Q8NDY8	209 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	GSTCD	Q8NEC7	633 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	DCAF4	Q8WV16	495 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	LINC01599	Q8WXQ3	324 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	PTPRN2	Q92932	1015 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	PTCHD1	Q96NR3	888 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	ZFYVE21	Q9BQ24	234 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	G6PC3	Q9BUM1	346 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	CDADC1	Q9BWV3	514 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	CARS2	Q9HA77	564 aa	Known RBP	5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	GPRC5C	Q9NQ84	441 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	ERVK13-1	Q9NX77	482 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	PRKAB1	Q9Y478	270 aa		5.59	□□□□□ -1.51
PTCD3-209	ENST00000472044	ARNTL	O00327	626 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	MEFV	O15553	781 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	FKTN	O75072	461 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	TBC1D8	O95759	1140 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	PLS3	P13797	630 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	PAM	P19021	973 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	FUT4	P22083	530 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	RPL10	P27635	214 aa	Known RBP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	SSTR4	P31391	388 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	GYS2	P54840	703 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	RBM10	P98175	930 aa	Known RBP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	ZP2	Q05996	745 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	PABPC4	Q13310	644 aa	Known RBP eCLIP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	TAF7L	Q5H9L4	462 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	ZPBP2	Q6X784	338 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	WAPL	Q7Z5K2	1190 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	NINJ1	Q92982	152 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	ALPK1	Q96QP1	1244 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	SLK	Q9H2G2	1235 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	PAK6	Q9NQU5	681 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	GPR27	Q9NS67	375 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	TNFRSF10D	Q9UBN6	386 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	CD2AP	Q9Y5K6	639 aa		5.58	□□□□□ -1.52
PTCD3-209	ENST00000472044	NPHP3-ACAD11	A0A0J9YXS1	232 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	ZGLP1	P0C6A0	271 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	LTBR	P36941	435 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	KIR2DL1	P43626	348 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	KIR2DL2	P43627	348 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	DUSP4	Q13115	394 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	KCNAB2	Q13303	367 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	CBX2	Q14781	532 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	HLA-DQA1	Q5Y7H0	255 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	SLC23A3	Q6PIS1	610 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	ZNF574	Q6ZN55	896 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	USP53	Q70EK8	1073 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	CCDC103	Q8IW40	242 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	PPIL6	Q8IXY8	311 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	SLC7A14	Q8TBB6	771 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	SYTL4	Q96C24	671 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	CCDC120	Q96HB5	630 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	MAP6	Q96JE9	813 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	CLUHP3	Q96NS8	147 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	INTS7	Q9NVH2	962 aa	Known RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	CLEC1B	Q9P126	229 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	TMEFF2	Q9UIK5	374 aa	Predicted RBP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	TMEM59L	Q9UK28	342 aa		5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	5.57	□□□□□ -1.52
PTCD3-209	ENST00000472044	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	5.56	□□□□□ -1.52
PTCD3-209	ENST00000472044	BLACE	A4D250	179 aa		5.56	□□□□□ -1.52
PTCD3-209	ENST00000472044	FADS2P1	A8MWK0	482 aa		5.56	□□□□□ -1.52
PTCD3-209	ENST00000472044	AQP7	O14520	342 aa		5.56	□□□□□ -1.52
PTCD3-209	ENST00000472044	RAPGEF3	O95398	923 aa		5.56	□□□□□ -1.52

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